Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G524300.1 | Wheat | mitochondrion | 72.48 | 74.85 |
| TraesCS2B01G554300.1 | Wheat | nucleus | 85.95 | 72.82 |
| TraesCS2D01G061700.1 | Wheat | golgi | 67.68 | 60.84 |
| Zm00001d032900_P001 | Maize | mitochondrion | 53.75 | 56.46 |
| Os05t0365500-01 | Rice | nucleus | 57.26 | 53.68 |
| OQU93028 | Sorghum | mitochondrion | 54.92 | 53.6 |
| OQU78362 | Sorghum | cytosol | 42.15 | 52.55 |
| GSMUA_Achr10P... | Banana | mitochondrion, plastid | 37.24 | 51.46 |
| VIT_12s0035g01700.t01 | Wine grape | mitochondrion | 33.84 | 46.09 |
| KRH26275 | Soybean | mitochondrion | 35.36 | 38.13 |
| CDY31037 | Canola | mitochondrion | 33.96 | 35.94 |
| Bra018451.1-P | Field mustard | mitochondrion | 33.84 | 35.81 |
| CDY25066 | Canola | cytosol | 5.39 | 35.66 |
| KRH06034 | Soybean | mitochondrion | 35.6 | 35.14 |
| CDX93444 | Canola | mitochondrion | 31.15 | 34.95 |
| CDY21873 | Canola | cytosol | 4.33 | 34.26 |
| CDY20645 | Canola | mitochondrion | 32.55 | 33.86 |
| Bra019952.1-P | Field mustard | mitochondrion | 31.97 | 33.33 |
| CDY34898 | Canola | mitochondrion | 33.02 | 33.02 |
| Bra031706.1-P | Field mustard | mitochondrion | 32.79 | 32.79 |
| CDX94912 | Canola | mitochondrion | 31.15 | 32.13 |
| AT1G10270.1 | Thale cress | mitochondrion | 32.67 | 30.56 |
| CDY09648 | Canola | extracellular, mitochondrion, plastid | 13.47 | 30.5 |
| CDY65945 | Canola | cytosol | 23.89 | 30.04 |
| Solyc01g103160.2.1 | Tomato | nucleus | 33.61 | 29.47 |
| PGSC0003DMT400064089 | Potato | mitochondrion, plastid | 33.61 | 27.7 |
| CDY53878 | Canola | mitochondrion | 4.57 | 27.08 |
| TraesCS3D01G216600.1 | Wheat | cytosol | 20.26 | 26.09 |
| TraesCS1D01G357400.1 | Wheat | mitochondrion | 17.45 | 23.43 |
| AT3G60960.1 | Thale cress | mitochondrion | 9.72 | 20.6 |
| CDY25062 | Canola | mitochondrion | 8.67 | 20.39 |
| CDY33104 | Canola | mitochondrion | 8.67 | 20.11 |
| AT3G60980.1 | Thale cress | mitochondrion | 9.48 | 19.66 |
| CDX95653 | Canola | mitochondrion | 9.02 | 19.2 |
| CDY37773 | Canola | mitochondrion | 9.25 | 18.59 |
| CDX80067 | Canola | mitochondrion | 9.13 | 17.93 |
| CDY10671 | Canola | mitochondrion | 8.31 | 17.79 |
| Bra004488.1-P | Field mustard | cytosol | 8.55 | 17.76 |
| AT5G28380.1 | Thale cress | cytosol | 7.73 | 16.92 |
| AT5G28340.1 | Thale cress | cytosol | 7.96 | 15.63 |
| CDX95410 | Canola | cytosol | 0.94 | 15.38 |
| Bra000388.1-P | Field mustard | cytosol | 5.39 | 14.84 |
| CDX80068 | Canola | mitochondrion | 8.31 | 13.42 |
| Bra004487.1-P | Field mustard | mitochondrion | 8.31 | 13.42 |
| CDX71714 | Canola | cytosol | 3.75 | 13.17 |
| CDY37774 | Canola | mitochondrion | 7.85 | 12.18 |
| CDY53879 | Canola | cytosol | 1.05 | 5.0 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G527300.1 | EnsemblPlantsGene:TraesCS2D01G527300 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF393 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | SUPFAM:SSF48452 |
| SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2D:-:615060627..615063946
Molecular Weight (calculated)
94076.9 Da
IEP (calculated)
7.186
GRAVY (calculated)
-0.676
Length
854 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPYRRLLL LRRLSISISQ SHLAPHPQPA PLLSPARHFA FSSAEEAAAE RRRRKRRLRI EPPLHALRRD PSNPPPPRDP NAPRLPDTTS SLVXXXLSLH
101: NRVQALIRSG DLDGAAAASR AAVSSRVRPT VFTCNAVAAS MVRAGRPDDA VALFAFFFRR SNIVPNVVSY NTLILAHCDA ARVDDALQAY QEMLDGLTSF
201: SPSTVSYRHL TKGLVAAGRV QDALDLLRDM LNRGQGADSI VYKNLIDGYV ALDDWDKAFQ LFDELREKAT VYDGVVHTSF MEGYWKKGMD KEAMDSYSSL
301: LDKKFKMTPA TCNVLLQTLF SHDKHKEAHD LWETMVDNHN PPSFIGVNSE SYTVMVNQCF KEGRFQDAIE VFHRQPRKSV QMDVACFNNI IGKLCENGML
401: AEAEQLFEEM ESKSVLPDVY TYTYLVDSCF KDGRVDDTMQ YFHKMADGRE HGPKFNIAFF NRMFQGLTEA GRIDDALKVY GRMPDKEIKP STATFEILVK
501: ASCKEGELDR ARDLVRDMAR GGVVAPPEFR ECIVEIFKTA DRQEEIEQAF DEKPVPPPPS PRPEYRPRSL PGFQQAVGAS QVQQPKFSSD SPVQSGFGTP
601: QPQQSTHISH QTQHAGFGTP RPWQTGFGSQ QAQQPGYGSQ QAQQPGYGSQ QAQQTGYGSQ QTQQPGYGSQ QGQQPGYGSH QAQQTGYGPH QAQQPGYSYQ
701: AQQPRYGAHQ AEQPGYGAYQ AQQPGYGAHQ ARQPGYGAPQ TSQPPFGLPE APQSGFRSAR TLPSYGHIGN QHDQFGSPPQ GRQKVDTQPA QDSGAPEAPQ
801: SGSGIAQSLP NSGHIGNQHD QFGSGGIKFS TQSPQEDFGT QASDEVAVKY AERY
101: NRVQALIRSG DLDGAAAASR AAVSSRVRPT VFTCNAVAAS MVRAGRPDDA VALFAFFFRR SNIVPNVVSY NTLILAHCDA ARVDDALQAY QEMLDGLTSF
201: SPSTVSYRHL TKGLVAAGRV QDALDLLRDM LNRGQGADSI VYKNLIDGYV ALDDWDKAFQ LFDELREKAT VYDGVVHTSF MEGYWKKGMD KEAMDSYSSL
301: LDKKFKMTPA TCNVLLQTLF SHDKHKEAHD LWETMVDNHN PPSFIGVNSE SYTVMVNQCF KEGRFQDAIE VFHRQPRKSV QMDVACFNNI IGKLCENGML
401: AEAEQLFEEM ESKSVLPDVY TYTYLVDSCF KDGRVDDTMQ YFHKMADGRE HGPKFNIAFF NRMFQGLTEA GRIDDALKVY GRMPDKEIKP STATFEILVK
501: ASCKEGELDR ARDLVRDMAR GGVVAPPEFR ECIVEIFKTA DRQEEIEQAF DEKPVPPPPS PRPEYRPRSL PGFQQAVGAS QVQQPKFSSD SPVQSGFGTP
601: QPQQSTHISH QTQHAGFGTP RPWQTGFGSQ QAQQPGYGSQ QAQQPGYGSQ QAQQTGYGSQ QTQQPGYGSQ QGQQPGYGSH QAQQTGYGPH QAQQPGYSYQ
701: AQQPRYGAHQ AEQPGYGAYQ AQQPGYGAHQ ARQPGYGAPQ TSQPPFGLPE APQSGFRSAR TLPSYGHIGN QHDQFGSPPQ GRQKVDTQPA QDSGAPEAPQ
801: SGSGIAQSLP NSGHIGNQHD QFGSGGIKFS TQSPQEDFGT QASDEVAVKY AERY
001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
Arabidopsis Description
GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.