Factsheet for Bra004488.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80067	Canola	mitochondrion	100.0	94.48
Bra000388.1-P	Field mustard	cytosol	24.09	31.94
Bra004487.1-P	Field mustard	mitochondrion	25.79	20.04
GSMUA_Achr10P...	Banana	mitochondrion, plastid	18.49	12.3
Bra019952.1-P	Field mustard	mitochondrion	20.44	10.26
Bra031706.1-P	Field mustard	mitochondrion	20.19	9.72
Bra018451.1-P	Field mustard	mitochondrion	18.73	9.54
Zm00001d032900_P001	Maize	mitochondrion	18.0	9.1
TraesCS2A01G524300.1	Wheat	mitochondrion	18.25	9.07
TraesCS2D01G527300.1	Wheat	mitochondrion	17.76	8.55
OQU93028	Sorghum	mitochondrion	18.0	8.46
Os05t0365500-01	Rice	nucleus	18.25	8.23
TraesCS2A01G063500.1	Wheat	mitochondrion	18.0	7.88
TraesCS2D01G061700.1	Wheat	golgi	18.0	7.79
OQU78362	Sorghum	cytosol	12.65	7.59
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	18.25	7.4
TraesCS2B01G554300.1	Wheat	nucleus	18.0	7.34
Bra017999.1-P	Field mustard	cytosol	8.27	6.03
Bra019587.1-P	Field mustard	cytosol	7.54	5.52
HORVU2Hr1G011400.1	Barley	cytosol	10.71	5.49
Bra029944.1-P	Field mustard	mitochondrion, plastid	8.27	5.26
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	10.46	4.92

Protein Annotations

EnsemblPlants:Bra004488.1	EnsemblPlants:Bra004488.1-P	EnsemblPlantsGene:Bra004488	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF393	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
UniParc:UPI00025472C7	UniProt:M4CJV4	MapMan:35.1	:	:	:

Description

AT3G60960 (E=1e-065) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA05:+:392773..394008

Molecular Weight (calculated)

46734.8 Da

IEP (calculated)

5.237

GRAVY (calculated)

-0.269

Length

411 amino acids

Sequence
(BLAST)

001: MSTGVASATV ARYPLGKDLS WLPRNPTSED VNRAADLVKG RPVSLLYRVL TMIELSDVDG AVELARLCVL KDDSRRHDTI LICNAVIGAM CQAKRFEQGI
101: GLFHYFFNEN NIVPNIASFN YVIKAFCELG RVDDALQLYR HAARFGPDKE TFSLLTQALV HAYGYEEAGI FVGLSRCLTT ADDWTPMLIE IRGRLDQMNA
201: EDADDYFHTN RLKFDDDDDD GVFKSIATIF VEYWLKHGNE EKAMECYSTI RTWESLPATT GNTLLRILLE NCKRTEAGAL IEVNAKDLYH NMLKKHKRFD
301: SETINIMVDY WFDIGEVNKA METFNESQQG RKRMVRCYCN VVARLCERGM MSEAEGLFED MCSDKDLSPP DVSTFRSMVN GYVRAGRVDD AIKTSNKLAI
401: LKLRKVSIYE D

Best Arabidopsis Sequence Match ( AT3G60960.2 )
(BLAST)

001: MSLLRRIVRN STVSKAVPVA KAFMPYPLGR DPSSLPKLDP VSISYIDSRP ISLRYRVRAM IEMSNLDEAS KLSRLAVLNG FLVDRDTVFI CNSVIGAMCS
101: AKRYDDAISL FNYFFNESQT LPNTLSCDLI IKAHCDQGHV DDALELYRHI LLDGRVAPGI ETYMILAKAL VDAKRFDEAC VLARSMSCCS FMVYDILIRG
201: FLDIGNFVKA SQIFEELKGL DSKLPGREYH KANAIFNVSF MNYWFKQGKD EEAMEILANL EDAQVLNPIV GNRVLQVLVK HGKKTEAWEL FGEMIEICDS
301: ETVDIMSEYF SEKTVPFERL RKTCYRKMIV SLCEHGKVSD AEKLFAEMFT DVDGGDLLVG PDLLIFRAMI NGYVSVGRVD DAIKTLNKMR ISNLRKLAIH
401: QAP

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178V6P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.