CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER98576

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	EER98576	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78362	Sorghum	cytosol	47.43	60.58
TraesCS2A01G524300.1	Wheat	mitochondrion	53.6	56.71
GSMUA_Achr10P...	Banana	mitochondrion, plastid	38.97	55.18
TraesCS2D01G527300.1	Wheat	mitochondrion	53.6	54.92
Os05t0365500-01	Rice	nucleus	56.57	54.34
TraesCS2A01G063500.1	Wheat	mitochondrion	54.86	51.12
TraesCS2D01G061700.1	Wheat	golgi	54.97	50.63
VIT_12s0035g01700.t01	Wine grape	mitochondrion	35.2	49.12
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	55.43	47.83
HORVU2Hr1G011400.1	Barley	cytosol	42.63	46.57
TraesCS2B01G554300.1	Wheat	nucleus	53.6	46.53
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	42.06	42.11
KRH26275	Soybean	mitochondrion	35.31	39.02
CDX93444	Canola	mitochondrion	31.54	36.27
KRH06034	Soybean	mitochondrion	35.66	36.07
CDY25066	Canola	cytosol	5.26	35.66
CDY31037	Canola	mitochondrion	31.77	34.45
CDY20645	Canola	mitochondrion	32.23	34.35
Bra018451.1-P	Field mustard	mitochondrion	31.66	34.32
Bra019952.1-P	Field mustard	mitochondrion	32.11	34.31
CDX94912	Canola	mitochondrion	32.34	34.18
CDY34898	Canola	mitochondrion	33.03	33.84
Bra031706.1-P	Field mustard	mitochondrion	32.8	33.61
CDY21873	Canola	cytosol	4.11	33.33
Solyc01g103160.2.1	Tomato	nucleus	36.69	32.96
CDY09648	Canola	extracellular, mitochondrion, plastid	13.94	32.36
AT1G10270.1	Thale cress	mitochondrion	33.49	32.09
CDY65945	Canola	cytosol	24.34	31.37
PGSC0003DMT400064089	Potato	mitochondrion, plastid	36.57	30.89
EES03220	Sorghum	mitochondrion, plastid	20.46	26.88
CDY53878	Canola	mitochondrion	4.34	26.39
AT3G60980.1	Thale cress	mitochondrion	9.26	19.66
AT3G60960.1	Thale cress	mitochondrion	9.03	19.6
EES19865	Sorghum	mitochondrion	14.86	19.58
CDY25062	Canola	mitochondrion	8.0	19.28
CDY37773	Canola	mitochondrion	9.26	19.06
CDY33104	Canola	mitochondrion	8.0	19.02
CDX95653	Canola	mitochondrion	8.69	18.95
CDY10671	Canola	mitochondrion	8.46	18.55
CDX80067	Canola	mitochondrion	9.14	18.39
Bra004488.1-P	Field mustard	cytosol	8.46	18.0
AT5G28380.1	Thale cress	cytosol	7.2	16.15
Bra000388.1-P	Field mustard	cytosol	5.37	15.16
AT5G28340.1	Thale cress	cytosol	7.43	14.94
CDX71714	Canola	cytosol	4.0	14.4
CDX80068	Canola	mitochondrion	8.23	13.61
Bra004487.1-P	Field mustard	mitochondrion	8.23	13.61
CDX95410	Canola	cytosol	0.8	13.46
CDY37774	Canola	mitochondrion	7.54	12.0
CDY53879	Canola	cytosol	1.03	5.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1Z5SAT8	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:OQU93028	ProteinID:OQU93028	ProteinID:OQU93028.1	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3001G461300
SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B8B9D5D	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:73624193..73627972

Molecular Weight (calculated)

97009.8 Da

IEP (calculated)

7.800

GRAVY (calculated)

-0.559

Length

875 amino acids

Sequence
(BLAST)

001: MALYRRILLL RRLSHLHPSP APAICSSPPP TLAGLLTPTG RRHFAFSSAE EAAAERRRRK RRLRIEPPIN ALRRSPPPPR DPNAPRLPDT TSALVGPRLS
101: LHNRVQSLIR SGDLDGASVV ARAAVSSRVR PTVFTCNAVA AAMVRAARHD DAVALFEFFF RRSNIVPNIV SYNTLILAHC EACRVDTAMQ VYHDMLASAP
201: FSPSAVTYRH LTKGLVAAGR IRDALDLLRE MLSRNAGADS LVYNNLIAGY IDLGDWDKAF ELFNELAERC LVYDGVVHTT FMEGYWKQGK DKEAMDNYQS
301: LLDRGFKMTP ATCNVLLETL FKHGKHKEAN ELWETMIDNH SPPSFIGINA ESYNVMVNQC FREGKFKEAI EVFHRQPRKN VQMDVGCFNN IIGKLCENGM
401: LAEAEKLFEE METKSVLPDV YTYTYLVDSC FKEGRVEDTM QYFYKMADGR EHGPKFNIGF FNRMFEGLTE AGQIDDALKV YGRMPDKEIK PNTITFEILV
501: KALCKEGNLD QARDLVMDMA RNGIVPPPEF RESVVDFFKK ADRQEEIEKA FEEKPMPTPQ PRTEYQLRNE YRSRNAVGAG QAKQPGFSST PAVEPGFVYS
601: QPRQSTFSNN QNQQPEFGSS HSWSPGFGAP QAHGYGASQP VQAVVGSSYS QPQQSKFSNN QNQRPEFGSS HSYNSDFGAP QAQAGYGAPQ PVQAVAGSSY
701: SQPQQSTFSN NQNQRPEFGS SHSYNSDFGA PQAQPGYGAP QPVQAVAGSS QLRQSQFGAS QGVPAYSNIG NQHGQFGSPH GESKFSNHPP QVGYGAQLPQ
801: SGYRFEPQQE QAGFGNRGAL PAYVASSQPS YGTRWSSSGY GSTQGQLGYS GPQAQSHESQ LPHHQVDFVA MDVFF

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.