Factsheet for Solyc01g103160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g010300.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	Solyc05g010300.2.1	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064089	Potato	mitochondrion, plastid	70.84	66.6
VIT_12s0035g01700.t01	Wine grape	mitochondrion	37.27	57.89
GSMUA_Achr10P...	Banana	mitochondrion, plastid	29.77	46.93
KRH26275	Soybean	mitochondrion	36.55	44.95
KRH06034	Soybean	mitochondrion	37.78	42.54
CDX93444	Canola	mitochondrion	31.52	40.34
CDY31037	Canola	mitochondrion	32.14	38.79
Bra018451.1-P	Field mustard	mitochondrion	31.93	38.54
CDY34898	Canola	mitochondrion	33.78	38.52
Bra031706.1-P	Field mustard	mitochondrion	33.68	38.41
CDX94912	Canola	mitochondrion	32.55	38.28
CDY20645	Canola	mitochondrion	32.24	38.25
Bra019952.1-P	Field mustard	mitochondrion	31.72	37.73
CDY65945	Canola	cytosol	25.77	36.97
AT1G10270.1	Thale cress	mitochondrion	34.39	36.69
OQU93028	Sorghum	mitochondrion	32.96	36.69
Zm00001d032900_P001	Maize	mitochondrion	30.39	36.41
TraesCS2A01G524300.1	Wheat	mitochondrion	30.39	35.79
Os05t0365500-01	Rice	nucleus	32.75	35.02
TraesCS2D01G527300.1	Wheat	mitochondrion	29.47	33.61
TraesCS2D01G061700.1	Wheat	golgi	32.34	33.16
TraesCS2A01G063500.1	Wheat	mitochondrion	31.62	32.8
OQU78362	Sorghum	cytosol	22.48	31.97
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	32.14	30.87
TraesCS2B01G554300.1	Wheat	nucleus	31.52	30.46
HORVU2Hr1G011400.1	Barley	cytosol	23.0	27.96
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	23.61	26.32
Solyc03g083280.2.1	Tomato	nucleus	12.01	23.03
AT3G60980.1	Thale cress	mitochondrion	9.34	22.09
CDY25062	Canola	mitochondrion	7.49	20.11
CDY33104	Canola	mitochondrion	7.49	19.84
CDX71714	Canola	cytosol	4.62	18.52

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0016787	GO:GO:0051301	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4B1P2	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF393	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc01g103160.2	EnsemblPlants:Solyc01g103160.2.1
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276821A	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:91822862..91826734

Molecular Weight (calculated)

107635.0 Da

IEP (calculated)

8.855

GRAVY (calculated)

-0.594

Length

974 amino acids

Sequence
(BLAST)

001: MALYAILLRS LRRSSATVAA VRTQITTSVH NPQNPNFLLP HRSFAFSSAE EAAAERRRRK RRLRIEPPIN ALRRDPLPRG PPSPDDPRSR LPDTTSALVG
101: PRLNLHNRVQ SLIRAGDLDA AAAVARHAVF SNTRPTVFTC NAIIGAMYRS GRYNDAKALF QYFFNQYNII PNVVSYNHVI VSHCEAGEVD EGLKVYSHII
201: ENAPFSPSAV TYRHLTKGLI DSDRIAEAVD LLREMLNKGH GADSLVYNNL ILGFLNLGNL EKANELFDEL KERCTVYDGV VNATFMDWFF KQGKVKEAME
301: SYRSLLDKKY RMVPATCNVL LEVLLRHGRE TEAWALFDAM LDDHTPPTFQ AVNSDTFNLM VNECFRLGKV SEALETFKKV GKGLKTRPFA MDVAGYNNMI
401: TKLSELEMME EAEKYYMELC NKSLSPDVTT YRTMIEAYVK MDNVEGTLEK YTKMVEAGLR VIPVYAEKWF NFLIEKGKVA ECVPILTKMG EREPKPDVTT
501: YDIVIRALCE EGNYDASSNL VIQTINYGVG LTSSLREFLL ESFGNQGRRE EIERVFATKP TYSPPSTPPR GQVPWLSQLP RQLPGTSRAA GQQTSPASLS
601: SQVQGRPSAL NSTWPPSFIG GQQQASSPSF IGGRGSSQMQ GQQSAPNPRW QQASPPSFVA GQGSHQLQGQ QADPNPRWQQ ASPPTFVAGQ GSHQVQGQQS
701: APNPRWQQAS PPSFTAGQGS QQMQGQQSEP NPRWQQASPP SFVAGQGSHQ MHGQHSAPNP RWQQASPPSF IAGQVPQQMQ DQPSTFARNS HQASPSFIQH
801: GASPPSFMAG QGSQQMQGQP SAFARNVQQA SPPSFVPQQD ASAHSFMGSQ QMQGRPSGFT QGSQWSSAPS YMAGQGGQHQ NQGQPSGFTQ TPYKASPYSM
901: DGQRTHSMQG LTSGPVHNPL NETSHTSESV RDPASTFAQV PGQYVRHQAT EEASSQGDNI EQYQYPQVAR QGRM

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.