Factsheet for Zm00001d032900_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005295_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	Zm00001d005295_P001	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78362	Sorghum	cytosol	52.64	62.48
TraesCS2A01G524300.1	Wheat	mitochondrion	55.72	54.78
GSMUA_Achr10P...	Banana	mitochondrion, plastid	41.08	54.05
TraesCS2D01G527300.1	Wheat	mitochondrion	56.46	53.75
Os05t0365500-01	Rice	nucleus	59.29	52.91
TraesCS2D01G061700.1	Wheat	golgi	57.81	49.47
TraesCS2A01G063500.1	Wheat	mitochondrion	56.58	48.99
VIT_12s0035g01700.t01	Wine grape	mitochondrion	37.64	48.8
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	57.81	46.35
TraesCS2B01G554300.1	Wheat	nucleus	55.6	44.84
HORVU2Hr1G011400.1	Barley	cytosol	43.42	44.07
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	43.42	40.39
KRH26275	Soybean	mitochondrion	38.13	39.14
KRH06034	Soybean	mitochondrion	37.52	35.26
CDY25066	Canola	cytosol	5.54	34.88
CDX93444	Canola	mitochondrion	32.6	34.82
CDY31037	Canola	mitochondrion	34.44	34.7
Bra018451.1-P	Field mustard	mitochondrion	34.32	34.57
CDY20645	Canola	mitochondrion	34.56	34.23
CDY34898	Canola	mitochondrion	35.06	33.37
Bra031706.1-P	Field mustard	mitochondrion	34.81	33.14
Bra019952.1-P	Field mustard	mitochondrion	33.33	33.09
CDX94912	Canola	mitochondrion	33.46	32.85
AT1G10270.1	Thale cress	mitochondrion	35.42	31.54
CDY21873	Canola	cytosol	4.18	31.48
CDY09648	Canola	extracellular, mitochondrion, plastid	14.51	31.3
CDY65945	Canola	cytosol	25.58	30.63
Solyc01g103160.2.1	Tomato	nucleus	36.41	30.39
PGSC0003DMT400064089	Potato	mitochondrion, plastid	37.02	29.05
CDY53878	Canola	mitochondrion	4.8	27.08
Zm00001d044388_P001	Maize	plastid	16.36	24.01
CDY25062	Canola	mitochondrion	8.73	19.56
Zm00001d038733_P001	Maize	mitochondrion	15.87	19.37
CDY37773	Canola	mitochondrion	10.09	19.29
CDY33104	Canola	mitochondrion	8.73	19.29
CDX95653	Canola	mitochondrion	9.35	18.95
AT3G60980.1	Thale cress	mitochondrion	9.47	18.69
AT3G60960.1	Thale cress	mitochondrion	9.23	18.61
CDX80067	Canola	mitochondrion	9.84	18.39
CDY10671	Canola	mitochondrion	8.98	18.3
Bra004488.1-P	Field mustard	cytosol	9.1	18.0
AT5G28380.1	Thale cress	cytosol	7.75	16.15
Bra000388.1-P	Field mustard	cytosol	5.78	15.16
AT5G28340.1	Thale cress	cytosol	8.0	14.94
CDX71714	Canola	cytosol	4.31	14.4
CDX80068	Canola	mitochondrion	8.73	13.42
Bra004487.1-P	Field mustard	mitochondrion	8.73	13.42
CDY37774	Canola	mitochondrion	7.87	11.64
CDX95410	Canola	cytosol	0.74	11.54
CDY53879	Canola	cytosol	0.98	4.44

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100191742	MapMan:35.1	UniProt:B4FA01	EMBL:BT033939	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM06301.1	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00017B60E9	EnsemblPlantsGene:Zm00001d032900	EnsemblPlants:Zm00001d032900_P001	EnsemblPlants:Zm00001d032900_T001
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr1:-:242190467..242193230

Molecular Weight (calculated)

90839.0 Da

IEP (calculated)

7.673

GRAVY (calculated)

-0.612

Length

813 amino acids

Sequence
(BLAST)

001: MTLYRRVLLL RRLSHLHPSP VPAICSSPPP TLAGLLTPMG RRHFAFSSAE EAAAERRRRK RRLRIEPPIN ALRRGPPPPR DPNAPRLPDT TSALTGPRLS
101: LHNRVQSLIR SGDLDGASAA ARAAVSSRVR PTVFTSNAVA AAMVRAARHD DAVALFDFFF RRSNIVPNIV SYNTLILAHC EADRVDTALQ VYQDMLASAP
201: FSPSAVTFRH LTKGLVAAGR IGDALDLLRE MLSRSAGADS LVYNNLIAGY IDLNDWDRAF ELFNELAERC LVYDGVVHTT FMEGYWRQGK DKEAMDNYQS
301: LLDRGFKMTP ATCNVLLETL FKHGKHKEAN DLWETMIDNH TPPSFIGINA ESYNVMVNQC FREGKFQEAI EVFHRQPRKN VQMDVGCFNN IIGKLCENGM
401: LAEAKKLFEE MEKKSVLPDV YTYTYLVDSC FKEGYVEDTL EYFYKMADEK PHGPKFNIGF FNRMFEGLTE AGRIDDALKV YGRMPDKEIK PNMTTFEILV
501: KALCKEEDLD QARGLVMDMA RGGIVPPQGF RESVVNFFKE AGRQEEIEKA FEEKPMPTPQ PRTEYQPRTE YHSRNADGAA QIKQPGFSSA PAVGPEFLHS
601: QPQQSTLSNT PNQQPEFGSS RSWNSGFGAP QAQPGYGAPQ PVQTPQPQFG ASRGEPGYSN IGNQHVQFRS PQREPKFSNH PPQVGYGAQL PQSGYRFEPQ
701: QEQVGFGNQV AQPAHVASRQ PSYDTRWSSR DYGSTQGQLG YGGPQAQSYE SQLPHHQGSF GMPHFQNNNG FYRYNPGYGP SNGSQGFDAP HGDSKTAEST
801: TPEDRQQAAF LKA

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.