Factsheet for Zm00001d044388_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015570_P002
Zm00001d016399_P002
Zm00001d036749_P001
Zm00001d046595_P002
Zm00001d050125_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	Zm00001d015570_P002	AT5G20280.1	21798944
AT3G49240.1	Zm00001d016399_P002	AT5G20280.1	21798944
AT3G49240.1	Zm00001d036749_P001	AT5G20280.1	21798944
AT3G49240.1	Zm00001d046595_P002	AT5G20280.1	21798944
AT3G49240.1	Zm00001d050125_P002	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03220	Sorghum	mitochondrion, plastid	94.95	78.98
HORVU3Hr1G052300.1	Barley	plastid	18.77	77.61
TraesCS3D01G216600.1	Wheat	cytosol	77.26	64.56
TraesCS3A01G214000.1	Wheat	cytosol	76.9	64.25
HORVU3Hr1G052280.1	Barley	cytosol, plastid	75.81	63.35
Os11t0433600-01	Rice	nucleus	55.42	63.04
TraesCS3B01G244700.1	Wheat	cytosol	74.91	61.66
GSMUA_Achr9P05870_001	Banana	mitochondrion	59.39	51.33
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	59.93	50.53
Bra019587.1-P	Field mustard	cytosol	42.42	41.81
VIT_16s0098g01840.t01	Wine grape	plastid	48.74	41.35
KRH53501	Soybean	mitochondrion	46.75	40.98
CDY00193	Canola	plastid	42.78	40.79
KRH64444	Soybean	mitochondrion	46.03	40.41
PGSC0003DMT400023464	Potato	plastid	47.47	40.34
CDX86985	Canola	mitochondrion	42.6	40.07
Zm00001d038733_P001	Maize	mitochondrion	48.01	39.94
Bra017999.1-P	Field mustard	cytosol	39.53	38.83
CDX83077	Canola	mitochondrion, plastid	43.5	38.38
CDX68524	Canola	cytosol, mitochondrion, plastid	43.14	38.06
AT3G49240.1	Thale cress	cytosol, plastid	42.96	37.84
Bra029944.1-P	Field mustard	mitochondrion, plastid	43.86	37.62
CDY08118	Canola	plastid	40.25	37.42
Solyc03g083280.2.1	Tomato	nucleus	33.21	36.22
CDY05913	Canola	cytosol	25.45	28.95
Zm00001d032900_P001	Maize	mitochondrion	24.01	16.36
CDY05914	Canola	cytosol	3.43	12.58

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6NLC1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM41022.1	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000842B4EF	EnsemblPlantsGene:Zm00001d044388	EnsemblPlants:Zm00001d044388_P001
EnsemblPlants:Zm00001d044388_T001	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr3:-:226768741..226770738

Molecular Weight (calculated)

61135.1 Da

IEP (calculated)

5.153

GRAVY (calculated)

-0.402

Length

554 amino acids

Sequence
(BLAST)

001: MALSKPLLSR LLPLPLRLRP QARFLCLATP PLTPTPTQID DQPPADAAAE RRRRKRRLRV EPPLSRGPAP QRAPGAPRPA SNPNAPKIPE PASVLSGKRL
101: DLHRRILTLI RENDLDEAAL LTRHSIYSNC RPTVFTCNAV LAALLRQARY ADLLSLHRFV TQASVAPTVA TYNLLLQAYC DCRRPDVALE HFRLLLKDDS
201: PVLPSPTTYR ILARSLAENG KLDQALELKD GMLERGLIAP DTQVYAFIMG GFVNAGDGDK AVSLFEEIKE KLGGESILDG VVYGNLMKGY FLKGMEKEAM
301: DCYAEVLGEG SKVRFGAVSY NMVLDALGRN GRLDDALNLF DRMCMEHDPP RTITVNLGSF NVMVDAYCRA ERFQDAIEVF GKMAEKKCAP DALSYNNLID
401: WLDDAIKVAK CILLDESVVF SDETKALLEE ALDKEGRNGQ MTKLYEDVEM EKAEAAARAA EEKARAEALA KEEEERKKAE AKAKEEAAAR ASRAAIEAVL
501: GRKREAEKQE PVDGLNVEDA EVVESKSDTS DVSGEQNEGD EHKKQEPAEA SSCS

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.