Factsheet for Zm00001d038733_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015570_P002
Zm00001d016399_P002
Zm00001d036749_P001
Zm00001d046595_P002
Zm00001d050125_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	Zm00001d015570_P002	AT5G20280.1	21798944
AT3G49240.1	Zm00001d016399_P002	AT5G20280.1	21798944
AT3G49240.1	Zm00001d036749_P001	AT5G20280.1	21798944
AT3G49240.1	Zm00001d046595_P002	AT5G20280.1	21798944
AT3G49240.1	Zm00001d050125_P002	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19865	Sorghum	mitochondrion	83.63	83.89
TraesCS1B01G369200.1	Wheat	mitochondrion	71.47	74.03
TraesCS1D01G357400.1	Wheat	mitochondrion	70.57	73.9
HORVU1Hr1G080900.3	Barley	cytosol, plastid	72.37	71.94
TraesCS1A01G352600.1	Wheat	cytosol	42.19	65.81
Os05t0534000-01	Rice	cytosol	28.23	65.28
Zm00001d044388_P001	Maize	plastid	39.94	48.01
GSMUA_Achr9P05870_001	Banana	mitochondrion	44.89	46.65
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	45.35	45.97
Bra019587.1-P	Field mustard	cytosol	32.58	38.61
KRH53501	Soybean	mitochondrion	35.89	37.82
Bra017999.1-P	Field mustard	cytosol	31.53	37.23
CDX86985	Canola	mitochondrion	32.73	37.01
CDY00193	Canola	plastid	32.28	37.01
KRH64444	Soybean	mitochondrion	34.83	36.77
VIT_16s0098g01840.t01	Wine grape	plastid	36.04	36.75
CDY08118	Canola	plastid	32.28	36.07
CDX83077	Canola	mitochondrion, plastid	33.63	35.67
AT3G49240.1	Thale cress	cytosol, plastid	33.18	35.14
PGSC0003DMT400023464	Potato	plastid	34.08	34.82
Bra029944.1-P	Field mustard	mitochondrion, plastid	32.88	33.9
CDX68524	Canola	cytosol, mitochondrion, plastid	31.83	33.76
Solyc03g083280.2.1	Tomato	nucleus	23.27	30.51
CDY05914	Canola	cytosol	6.91	30.46
CDY05913	Canola	cytosol	15.47	21.15
Zm00001d032900_P001	Maize	mitochondrion	19.37	15.87

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6MA56	ProteinID:AQK87676.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1616	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000221D77F	EnsemblPlantsGene:Zm00001d038733	EnsemblPlants:Zm00001d038733_P001	EnsemblPlants:Zm00001d038733_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr6:+:163540535..163542535

Molecular Weight (calculated)

72301.2 Da

IEP (calculated)

5.170

GRAVY (calculated)

-0.222

Length

666 amino acids

Sequence
(BLAST)

001: MSLSKPVSAR RLVPALFPLA HADAASATAS RRERRKDTFV ATPPIPAPSP RAVRLAEPLP TLAPSRLAFH NRILALLSGP QADLPEAALL TRHALHSNCR
101: PSSFTCAAVL AALLRTRRLE DFFALHRFAL QAAVPPTAAT HVLYLSALAA RRLADDALHH LRIIARPGSP VPPSPTAYRV VVECLVADHG RLADAVKLKD
201: EMLTSGFVGP DPKVYSLLMA GFVGAGDGAK ALELYQELKD KVGGEPILDG IVYGTLMKAY FLMGTGEKVM ECYKEVLCVE SAVRFGAESY NEVVDALGQN
301: GRLEDALKLF DRMLEEHDPP LRIAVDLRSF RVMVDTYCAA GRFEDAVAVF RRMGEWKLVP DVASYNNLIR HLQINQLIDK AEVLYNEMCE SGVGADKETY
401: LLLTEACFSV DRIDDGISYF DKMDELELKP DATAYHKLID GLVGFSMVDK AQEYFNQMKE KGVNPSISSY ETLLKAYIAA DRLDDAVNVA KGILLNEKVL
501: FSYGMRELLE GALRGDGRGN DIAKLYEDVE REKAEAEARA AEEKARAEAL AREERERRRA EIAAKDEAAA KASAAAIEAI LAHKRKTENE GGAPAPDANT
601: LDGGFLSKLG LKTAGEGALQ DNPTESGDDG EGALHGNPTE SGDDGEGALQ GNPTERNGGN VQQGYL

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.