Factsheet for TraesCS1B01G369200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G015500.1
TraesCS3D01G013000.1
TraesCS6A01G144800.1
TraesCS6B01G173000.2
TraesCS6D01G133800.1
TraesCS7A01G518200.1
TraesCS7B01G434300.1
TraesCS7D01G508100.1
TraesCSU01G044500.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	TraesCS3A01G015500.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS3D01G013000.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS6A01G144800.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS6B01G173000.2	AT5G20280.1	21798944
AT3G49240.1	TraesCS6D01G133800.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7A01G518200.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7B01G434300.1	AT5G20280.1	21798944
AT3G49240.1	TraesCS7D01G508100.1	AT5G20280.1	21798944
AT3G49240.1	TraesCSU01G044500.2	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G357400.1	Wheat	mitochondrion	94.09	95.13
TraesCS1A01G352600.1	Wheat	cytosol	58.16	87.59
HORVU1Hr1G080900.3	Barley	cytosol, plastid	89.74	86.12
Zm00001d038733_P001	Maize	mitochondrion	74.03	71.47
EES19865	Sorghum	mitochondrion	72.94	70.63
Os05t0534000-01	Rice	cytosol	29.39	65.62
TraesCS3B01G244700.1	Wheat	cytosol	49.14	46.95
GSMUA_Achr9P05870_001	Banana	mitochondrion	45.57	45.71
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	46.19	45.21
Bra019587.1-P	Field mustard	cytosol	34.53	39.5
KRH53501	Soybean	mitochondrion	38.57	39.24
Bra017999.1-P	Field mustard	cytosol	33.59	38.3
CDY00193	Canola	plastid	34.37	38.04
CDX86985	Canola	mitochondrion	34.53	37.69
VIT_16s0098g01840.t01	Wine grape	plastid	37.95	37.37
KRH64444	Soybean	mitochondrion	36.24	36.93
CDY08118	Canola	plastid	34.06	36.74
CDX83077	Canola	mitochondrion, plastid	35.77	36.62
PGSC0003DMT400023464	Potato	plastid	36.55	36.04
CDY05914	Canola	cytosol	8.4	35.76
AT3G49240.1	Thale cress	cytosol, plastid	34.68	35.45
CDX68524	Canola	cytosol, mitochondrion, plastid	34.37	35.19
Bra029944.1-P	Field mustard	mitochondrion, plastid	35.15	34.98
Solyc03g083280.2.1	Tomato	nucleus	24.88	31.5
CDY05913	Canola	cytosol	16.49	21.77
TraesCS2B01G554300.1	Wheat	nucleus	23.48	14.98
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	22.86	14.5

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1616	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS1B01G369200	EnsemblPlants:TraesCS1B01G369200.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:-:599340363..599342294

Molecular Weight (calculated)

70009.8 Da

IEP (calculated)

5.295

GRAVY (calculated)

-0.144

Length

643 amino acids

Sequence
(BLAST)

001: MSLSKPLAAR RLVPALFPLA HADAASAAAS RRARRRGAFV ATPPAPPPSP SSVRLAEPLP SLAPSRLALH NRVLALLSPA AAAQAPDLNE AALLTRHALH
101: SNCRPSSFTC VAVLAALLRA RRLDDFFALH RFALQAAVPP TAATHALYLS ALAARRLPDA ALLHLRLIAR PRSPVPPSPT AYRVVVRCLV ADHGRLADAV
201: ALKDEMLASG FVGPDPHVYS LLMAGFVEAG DGAKAVELHQ ELQDKLGGEP VLDGIVYGSL MKAYFLMGME EKAMECYKEV FTPESEVRFG TESYNEVLDA
301: LGKNQRLEDA LNLFDRMLGE HDPPLRITVD VRSFSVMVDA YCAAGRFEDA IAVFRRMGEY KVVPDVAAYN NLIRHLGLNK LVDEAEVLHK EMGEHGLVPD
401: EETCVLLMEA CFKADRIDDG ISYFDRMAEL ELKPDASHYH RIIDGLVDLS LLDKAQEYFD EMREKKIHPS IATYETLLKA YVGVGVTRLD DAAKVAKCIL
501: LDENVVFSDE TRELLEGALR GEGREDDIAK LYEDVEREKA EAVLRAEEEK ARAEALAREE RATRRAEAAA KDEAAAKASA AAIEAIIGHR RKTEGETEAP
601: ASTPNTLDAG ILSRLGLSSP GEGAPQDTPI ISTETKGDGQ EQF

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.