Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G144800.1 | Wheat | cytoskeleton, cytosol, nucleus | 99.07 | 99.07 |
| HORVU6Hr1G028330.1 | Barley | endoplasmic reticulum, golgi | 98.24 | 91.76 |
| TraesCS6B01G173000.2 | Wheat | endoplasmic reticulum, plasma membrane | 98.96 | 91.73 |
| KXG29640 | Sorghum | cytosol | 89.63 | 89.63 |
| Zm00001d015570_P002 | Maize | cytosol | 88.9 | 88.9 |
| Os02t0184400-01 | Rice | endoplasmic reticulum, golgi | 89.63 | 85.46 |
| TraesCS7D01G508100.1 | Wheat | cytosol | 82.16 | 81.57 |
| CDX88168 | Canola | nucleus | 61.1 | 61.35 |
| CDX70382 | Canola | cytosol | 61.2 | 61.33 |
| CDX80498 | Canola | cytosol | 61.31 | 61.12 |
| GSMUA_Achr9P22510_001 | Banana | cytosol | 67.01 | 60.89 |
| GSMUA_Achr4P06050_001 | Banana | cytosol | 66.81 | 60.81 |
| CDX92473 | Canola | cytosol | 60.06 | 59.94 |
| CDY35815 | Canola | cytosol | 59.96 | 59.83 |
| CDY45096 | Canola | cytosol | 59.54 | 59.05 |
| VIT_11s0118g00200.t01 | Wine grape | cytosol | 63.49 | 58.17 |
| KRH03629 | Soybean | endoplasmic reticulum | 63.59 | 57.88 |
| KRH20178 | Soybean | nucleus | 63.38 | 57.7 |
| TraesCS3D01G013000.1 | Wheat | nucleus | 63.38 | 57.16 |
| VIT_04s0008g05730.t01 | Wine grape | cytosol | 62.24 | 56.71 |
| PGSC0003DMT400071807 | Potato | cytosol | 61.93 | 56.64 |
| Bra009830.1-P | Field mustard | nucleus | 61.51 | 56.64 |
| CDX78411 | Canola | cytosol | 61.0 | 56.59 |
| Bra006090.1-P | Field mustard | cytosol | 60.89 | 56.5 |
| Solyc07g007790.2.1 | Tomato | cytosol | 61.72 | 56.45 |
| Bra002289.1-P | Field mustard | cytosol | 60.37 | 55.85 |
| AT5G11110.1 | Thale cress | cytosol | 60.58 | 55.78 |
| AT5G20280.1 | Thale cress | cytosol | 59.96 | 55.42 |
| Bra020096.1-P | Field mustard | cytosol | 59.02 | 55.24 |
| Solyc08g042000.2.1 | Tomato | nucleus | 59.54 | 54.93 |
| TraesCS3D01G420300.1 | Wheat | nucleus | 50.21 | 45.19 |
| TraesCS4D01G088200.1 | Wheat | cytosol, golgi, unclear | 47.3 | 43.22 |
| PGSC0003DMT400076855 | Potato | cytosol, peroxisome, plastid | 23.13 | 42.72 |
| TraesCS4D01G169800.1 | Wheat | cytosol | 15.66 | 18.66 |
| TraesCS7D01G036600.2 | Wheat | golgi | 15.46 | 18.28 |
| TraesCS7D01G159800.1 | Wheat | mitochondrion | 15.56 | 18.16 |
| TraesCS2D01G175600.1 | Wheat | golgi, unclear | 15.56 | 18.03 |
| TraesCS6D01G403800.1 | Wheat | cytosol | 15.56 | 17.3 |
| TraesCS7D01G552800.1 | Wheat | cytosol | 15.04 | 16.84 |
| TraesCS2D01G403600.1 | Wheat | cytosol | 14.94 | 16.63 |
Protein Annotations
| KEGG:00500+2.4.1.14 | MapMan:3.1.2.7 | Gene3D:3.40.50.2000 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005975 | GO:GO:0005985 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016157 |
| GO:GO:0016740 | GO:GO:0046524 | InterPro:Glyco_trans_1 | PFAM:PF00534 | PFAM:PF00862 | PFAM:PF05116 |
| PANTHER:PTHR12526 | PANTHER:PTHR12526:SF347 | InterPro:SPP_N | InterPro:SPS_C | SUPFAM:SSF53756 | InterPro:Sucrose_synth |
| InterPro:SucrsPsyn_pln | TIGRFAMs:TIGR02468 | EnsemblPlantsGene:TraesCS6D01G133800 | EnsemblPlants:TraesCS6D01G133800.1 | TIGR:cd03800 | TIGR:cd16419 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:101252892..101260275
Molecular Weight (calculated)
107605.0 Da
IEP (calculated)
7.474
GRAVY (calculated)
-0.330
Length
964 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGNDNWINS YLDAILDAGK SAVGGDRPSL LLRERGHFSP ARYFVEEVIT GYDETDLYKT WLRANAMRSP QERNTRLENM TWRIWNLARK KKELEKEEAC
101: RLLKRHPETE KTRIDATADM SEDLFEGEKG EDAGDPSVAY GDSTTGVSPK TSSVDKLYIV LISLHGLVRG ENMELGRDSD TGGQVKYVVE FAKALSSSPG
201: VYRVDLLTRQ ILAPNFDRSY GEPAEMLVST TFKNSKQEKG ENSGGYIIRI PFGPRDMYLT KERLWPFIQE FVDGALSHIV RMSKTISEEI GCGHPVWPAV
301: IHGHYASAGI AATLLSGALN LPMAFTGHFL GKDKLEGLLK QGRQSREEIN MTYKIMRRIE AEELSLDASE IVIASTRQEI EEQWNLYDGF EVILARKLRA
401: RVKRGANCYG RXXXXXXIIP PGVEFGHIIH DFDIDGEEEN HGPASEDPPI WSQIMRFFTN PRKPMILAVA RPYPEKNITT LVKAFGECRP LRELANLTLI
501: MGNREAISKM HNTSASVLTS VLTLIDEYDL YGQVAYPKHH KHSEVPDIYR LATRTKGAFV NVAYFEQFGV TLIEAAMNGL PVIATKNGAP VEIHQVLNNG
601: LLVDPHDQNA IADALYKLLS EKQLWSRCRE NGLKNIHQFS WPEHCKNHLS RILTLGMRSP AVGSEEERSK APISGRKHII VISVDSVNKE NLVRIIRNAI
701: EAAHTENTPA STGFVLSTSL TISEICSLLV SVGMHPAGFD AFICNSGSSI YYPSYSGNTP SNSKVTHVID RNHQSHIEYR WGGEGLRKYL VKWATSVVER
801: KGRIERQMIF EDSEHSSTYC LAFKVVNPNH LPPLKELRKL MRIQSLRCNA LYNHSATRLS VTPIHASRSQ AIRYLFVRWG IELPNIVVMV GERGDSDYEE
901: LLGGLHRTII LKGDFNIAAN RIHTVRRYPL QDVVALDSSN IIEVQGCTTE DIKSALRQIG VPTQ
101: RLLKRHPETE KTRIDATADM SEDLFEGEKG EDAGDPSVAY GDSTTGVSPK TSSVDKLYIV LISLHGLVRG ENMELGRDSD TGGQVKYVVE FAKALSSSPG
201: VYRVDLLTRQ ILAPNFDRSY GEPAEMLVST TFKNSKQEKG ENSGGYIIRI PFGPRDMYLT KERLWPFIQE FVDGALSHIV RMSKTISEEI GCGHPVWPAV
301: IHGHYASAGI AATLLSGALN LPMAFTGHFL GKDKLEGLLK QGRQSREEIN MTYKIMRRIE AEELSLDASE IVIASTRQEI EEQWNLYDGF EVILARKLRA
401: RVKRGANCYG RXXXXXXIIP PGVEFGHIIH DFDIDGEEEN HGPASEDPPI WSQIMRFFTN PRKPMILAVA RPYPEKNITT LVKAFGECRP LRELANLTLI
501: MGNREAISKM HNTSASVLTS VLTLIDEYDL YGQVAYPKHH KHSEVPDIYR LATRTKGAFV NVAYFEQFGV TLIEAAMNGL PVIATKNGAP VEIHQVLNNG
601: LLVDPHDQNA IADALYKLLS EKQLWSRCRE NGLKNIHQFS WPEHCKNHLS RILTLGMRSP AVGSEEERSK APISGRKHII VISVDSVNKE NLVRIIRNAI
701: EAAHTENTPA STGFVLSTSL TISEICSLLV SVGMHPAGFD AFICNSGSSI YYPSYSGNTP SNSKVTHVID RNHQSHIEYR WGGEGLRKYL VKWATSVVER
801: KGRIERQMIF EDSEHSSTYC LAFKVVNPNH LPPLKELRKL MRIQSLRCNA LYNHSATRLS VTPIHASRSQ AIRYLFVRWG IELPNIVVMV GERGDSDYEE
901: LLGGLHRTII LKGDFNIAAN RIHTVRRYPL QDVVALDSSN IIEVQGCTTE DIKSALRQIG VPTQ
0001: MARNDWINSY LEAILDVGTS KKKRFESNSK IVQKLGDINS KDHQEKVFGD MNGKDHQEKV FSPIKYFVEE VVNSFDESDL YKTWIKVIAT RNTRERSNRL
0101: ENICWRIWHL ARKKKQIVWD DGVRLSKRRI EREQGRNDAE EDLLSELSEG EKDKNDGEKE KSEVVTTLEP PRDHMPRIRS EMQIWSEDDK SSRNLYIVLI
0201: SMHGLVRGEN MELGRDSDTG GQVKYVVELA RALANTEGVH RVDLLTRQIS SPEVDYSYGE PVEMLSCPPE GSDSCGSYII RIPCGSRDKY IPKESLWPHI
0301: PEFVDGALNH IVSIARSLGE QVNGGKPIWP YVIHGHYADA GEVAAHLAGA LNVPMVLTGH SLGRNKFEQL LQQGRITRED IDRTYKIMRR IEAEEQSLDA
0401: AEMVVTSTRQ EIDAQWGLYD GFDIKLERKL RVRRRRGVSC LGRYMPRMVV IPPGMDFSYV LTQDSQEPDG DLKSLIGPDR NQIKKPVPPI WSEIMRFFSN
0501: PHKPTILALS RPDHKKNVTT LVKAFGECQP LRELANLVLI LGNRDDIEEM PNSSSVVLMN VLKLIDQYDL YGQVAYPKHH KQSEVPDIYR LAAKTKGVFI
0601: NPALVEPFGL TLIEAAAYGL PIVATRNGGP VDIVKALNNG LLVDPHDQQA ISDALLKLVA NKHLWAECRK NGLKNIHRFS WPEHCRNYLS HVEHCRNRHP
0701: TSSLDIMKVP EELTSDSLRD VDDISLRFST EGDFTLNGEL DAGTRQKKLV DAISQMNSMK GCSAAIYSPG RRQMLFVVAV DSYDDNGNIK ANLNEIIKNM
0801: IKAADLTSGK GKIGFVLASG SSLQEVVDIT QKNLINLEDF DAIVCNSGSE IYYPWRDMMV DADYETHVEY KWPGESIRSV ILRLICTEPA AEDDITEYAS
0901: SCSTRCYAIS VKQGVKTRRV DDLRQRLRMR GLRCNIVYTH AATRLNVIPL CASRIQALRY LSIRWGIDMS KTVFFLGEKG DTDYEDLLGG LHKTIILKGV
1001: VGSDSEKLLR SEENFKREDA VPQESPNISY VKENGGSQEI MSTLEAYGIK
0101: ENICWRIWHL ARKKKQIVWD DGVRLSKRRI EREQGRNDAE EDLLSELSEG EKDKNDGEKE KSEVVTTLEP PRDHMPRIRS EMQIWSEDDK SSRNLYIVLI
0201: SMHGLVRGEN MELGRDSDTG GQVKYVVELA RALANTEGVH RVDLLTRQIS SPEVDYSYGE PVEMLSCPPE GSDSCGSYII RIPCGSRDKY IPKESLWPHI
0301: PEFVDGALNH IVSIARSLGE QVNGGKPIWP YVIHGHYADA GEVAAHLAGA LNVPMVLTGH SLGRNKFEQL LQQGRITRED IDRTYKIMRR IEAEEQSLDA
0401: AEMVVTSTRQ EIDAQWGLYD GFDIKLERKL RVRRRRGVSC LGRYMPRMVV IPPGMDFSYV LTQDSQEPDG DLKSLIGPDR NQIKKPVPPI WSEIMRFFSN
0501: PHKPTILALS RPDHKKNVTT LVKAFGECQP LRELANLVLI LGNRDDIEEM PNSSSVVLMN VLKLIDQYDL YGQVAYPKHH KQSEVPDIYR LAAKTKGVFI
0601: NPALVEPFGL TLIEAAAYGL PIVATRNGGP VDIVKALNNG LLVDPHDQQA ISDALLKLVA NKHLWAECRK NGLKNIHRFS WPEHCRNYLS HVEHCRNRHP
0701: TSSLDIMKVP EELTSDSLRD VDDISLRFST EGDFTLNGEL DAGTRQKKLV DAISQMNSMK GCSAAIYSPG RRQMLFVVAV DSYDDNGNIK ANLNEIIKNM
0801: IKAADLTSGK GKIGFVLASG SSLQEVVDIT QKNLINLEDF DAIVCNSGSE IYYPWRDMMV DADYETHVEY KWPGESIRSV ILRLICTEPA AEDDITEYAS
0901: SCSTRCYAIS VKQGVKTRRV DDLRQRLRMR GLRCNIVYTH AATRLNVIPL CASRIQALRY LSIRWGIDMS KTVFFLGEKG DTDYEDLLGG LHKTIILKGV
1001: VGSDSEKLLR SEENFKREDA VPQESPNISY VKENGGSQEI MSTLEAYGIK
Arabidopsis Description
SPS4Probable sucrose-phosphate synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JLK2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.