Factsheet for Bra020096.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009378.1-P
Bra028380.1-P
Bra030508.1-P
Bra033338.1-P
Bra038762.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20280.1	Bra030508.1-P	AT1G02680.1	21798944
AT5G20280.1	Bra033338.1-P	AT1G02680.1	21798944
AT5G20280.1	Bra028380.1-P	AT1G61870.1	21798944
AT5G20280.1	Bra038762.1-P	AT4G21705.1	21798944
AT5G20280.1	Bra009378.1-P	AT5G09320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45096	Canola	cytosol	91.46	96.91
Bra002289.1-P	Field mustard	cytosol	94.17	93.09
AT5G20280.1	Thale cress	cytosol	91.65	90.51
VIT_11s0118g00200.t01	Wine grape	cytosol	76.02	74.43
KRH20178	Soybean	nucleus	75.73	73.65
KRH03629	Soybean	endoplasmic reticulum	75.63	73.56
Solyc07g007790.2.1	Tomato	cytosol	73.98	72.3
PGSC0003DMT400071807	Potato	cytosol	73.98	72.3
GSMUA_Achr4P06050_001	Banana	cytosol	69.13	67.23
Bra009830.1-P	Field mustard	nucleus	67.77	66.67
GSMUA_Achr9P22510_001	Banana	cytosol	68.64	66.64
Bra006090.1-P	Field mustard	cytosol	67.09	66.51
Os08t0301500-01	Rice	plasma membrane	66.5	64.26
OQU78428	Sorghum	nucleus	65.53	63.08
TraesCS3D01G013000.1	Wheat	nucleus	65.44	63.05
TraesCSU01G044500.2	Wheat	unclear	65.53	62.73
TraesCS3A01G015500.1	Wheat	golgi	65.15	62.65
Zm00001d050125_P002	Maize	nucleus	64.27	62.51
Zm00001d015570_P002	Maize	cytosol	56.31	60.17
TraesCS7B01G434300.1	Wheat	cytosol	56.7	60.14
TraesCS7A01G518200.1	Wheat	cytosol	56.7	60.08
TraesCS7D01G508100.1	Wheat	cytosol	56.6	60.04
HORVU3Hr1G002280.1	Barley	plastid	65.63	59.82
TraesCS6A01G144800.1	Wheat	cytoskeleton, cytosol, nucleus	55.83	59.65
KXG29640	Sorghum	cytosol	55.63	59.44
Zm00001d036749_P001	Maize	cytosol	55.92	59.08
TraesCS6D01G133800.1	Wheat	cytosol	55.24	59.02
KXG20466	Sorghum	cytosol	55.83	58.67
Os02t0184400-01	Rice	endoplasmic reticulum, golgi	56.02	57.07
HORVU6Hr1G028330.1	Barley	endoplasmic reticulum, golgi	56.12	56.01
TraesCS6B01G173000.2	Wheat	endoplasmic reticulum, plasma membrane	55.92	55.38
HORVU7Hr1G115590.10	Barley	nucleus	51.94	53.55
Bra033195.1-P	Field mustard	cytosol	54.37	53.49
Bra015364.1-P	Field mustard	cytosol	44.08	53.16
Zm00001d046595_P002	Maize	cytosol	49.81	52.45
Os06t0643800-01	Rice	plasma membrane	8.83	49.46
Zm00001d016399_P002	Maize	extracellular	6.5	42.68
Bra037432.1-P	Field mustard	cytosol	16.02	20.45
Bra036282.1-P	Field mustard	cytosol, mitochondrion	16.02	20.35
Bra002332.1-P	Field mustard	cytosol	14.27	18.7
Bra006578.1-P	Field mustard	cytosol	14.37	18.36
Bra039502.1-P	Field mustard	cytosol	13.79	16.97
Bra003845.1-P	Field mustard	cytosol	15.15	16.6
Bra015995.1-P	Field mustard	cytosol	14.95	16.33

Protein Annotations

KEGG:00500+2.4.1.14	MapMan:3.1.2.7	Gene3D:3.40.50.2000	ProteinID:AAO26334	ProteinID:AAO26334.1	EMBL:AY184484
EnsemblPlantsGene:Bra020096	EnsemblPlants:Bra020096.1	EnsemblPlants:Bra020096.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157
GO:GO:0016740	GO:GO:0016757	GO:GO:0046524	InterPro:Glyco_trans_1	UniProt:M4DUA3	PFAM:PF00534
PFAM:PF00862	PFAM:PF05116	PANTHER:PTHR12526	PANTHER:PTHR12526:SF334	InterPro:SPP_N	InterPro:SPS_C
SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:SucrsPsyn_pln	TIGRFAMs:TIGR02468	UniParc:UPI000254335C	SEG:seg

Description

AT5G20280 (E=0.0) ATSPS1F | ATSPS1F (sucrose phosphate synthase 1F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups

Coordinates

chrA02:-:5008846..5014297

Molecular Weight (calculated)

115416.0 Da

IEP (calculated)

5.935

GRAVY (calculated)

-0.453

Length

1030 amino acids

Sequence
(BLAST)

0001: MAGNDWVNSY LEAILDVGQP LDDARPSLLL RERGRFTPSR YFVEEVITGY DETDLHKSWT KAVATRSTQE RNTRLENMCW RIWNLARQKK QHEEKEAQRL
0101: AKRRLERERG RREVTDDMSE EFSEGEKGDI VSDVSTHGIK SRLARINSAD LHGLIRGENM ELGRDSDTGG QVKYVVELAR ALGSMPGVYR VDLLTRQVSS
0201: PDVDYSYGEP TEMLTPRDSE DLSDEMGESS GAYIVRIPFG PKDKYIPKEL LWPHIAEFVD GAMSHIIQMS NVLGEQVVGG GSGKPIWPSA IHGHYADAGD
0301: AAALLSGALN VPMILTGHSL GRDKLEQLLK QGRLSKEEIN STYKIMRRIE GEELSVDVSE MVITSTRQEI DEQWRLYDGF DPILERKLRA RIKRNVSCYG
0401: RFMPRMVKIP PGMEFNHIVP HDGDMEDADG NEEHPTSRDP PIWAEIMRFF SNSRKPMILA LARPDPKKNI TTLVKAFGEC RPLRELANLA LIMGNRDGID
0501: EMSSTSSSVL LSVLKLVDKY DLYGQVAYPK HHKQSDVPDI YRLAAKSKGV FINPAFIEPF GLTLIEAAAY GLPMVATKNG GPVDIHRILD NGLLVDPHDQ
0601: QSLSEALLKL VADKHLWAKC RQNGLKNIHQ FSWPEHCKTY LSRITSFKPR HPQWQSDDDD DDGDNSEPES PGDSFRDISL NLRFSFDGGS GNDGSMNQEV
0701: SSSMDRKSKI EAAVLNWSKG KDSSRKMGSS LERSEVSSGK FPAVRRRKFI FVIALDFDGE KDTLAATRRI LEAVEKERAD GSVGFILSTS LKISEITSFL
0801: ESGGLSPNDF DAFVCNSGSD LYYTSLSSED GPFVVDFYYH SHVEYRWGGE GLRKTLIRWA SSVNEKRSGG DDDEQIVTLA EHLSTDYCYT FAVKKPAAVP
0901: PVRELRKVLR IQALRCHVVY SQSGTRINVI PVLASRVQAL RYLFVRWGID LAKMVVFVGE SGDTDYEGLL GGLHKSVVLE GVSCSASNAL HTNRSYPLTD
1001: VISLESNNVV HAPLDSDVRE ALKKLELLED

Best Arabidopsis Sequence Match ( AT5G20280.1 )
(BLAST)

0001: MAGNDWVNSY LEAILDVGQG LDDARSSPSL LLRERGRFTP SRYFVEEVIT GYDETDLHRS WVKAVATRSP QERNTRLENM CWRIWNLARQ KKQHEEKEAQ
0101: RLAKRRLERE KGRREATADM SEEFSEGEKG DIISDISTHG ESTKPRLPRI NSAESMELWA SQQKGNKLYL VLISLHGLIR GENMELGRDS DTGGQVKYVV
0201: ELARALGSMP GVYRVDLLTR QVSSPDVDYS YGEPTEMLTP RDSEDFSDEM GESSGAYIVR IPFGPKDKYI PKELLWPHIP EFVDGAMSHI MQMSNVLGEQ
0301: VGVGKPIWPS AIHGHYADAG DATALLSGAL NVPMLLTGHS LGRDKLEQLL RQGRLSKEEI NSTYKIMRRI EGEELSLDVS EMVITSTRQE IDEQWRLYDG
0401: FDPILERKLR ARIKRNVSCY GRFMPRMVKI PPGMEFNHIV PHGGDMEDTD GNEEHPTSPD PPIWAEIMRF FSNSRKPMIL ALARPDPKKN ITTLVKAFGE
0501: CRPLRELANL ALIMGNRDGI DEMSSTSSSV LLSVLKLIDK YDLYGQVAYP KHHKQSDVPD IYRLAAKSKG VFINPAIIEP FGLTLIEAAA HGLPMVATKN
0601: GGPVDIHRVL DNGLLVDPHD QQSISEALLK LVADKHLWAK CRQNGLKNIH QFSWPEHCKT YLSRITSFKP RHPQWQSDDG GDNSEPESPS DSLRDIQDIS
0701: LNLKFSFDGS GNDNYMNQEG SSMDRKSKIE AAVQNWSKGK DSRKMGSLER SEVNSGKFPA VRRRKFIVVI ALDFDGEEDT LEATKRILDA VEKERAEGSV
0801: GFILSTSLTI SEVQSFLVSG GLNPNDFDAF ICNSGSDLHY TSLNNEDGPF VVDFYYHSHI EYRWGGEGLR KTLIRWASSL NEKKADNDEQ IVTLAEHLST
0901: DYCYTFTVKK PAAVPPVREL RKLLRIQALR CHVVYSQNGT RINVIPVLAS RIQALRYLFV RWGIDMAKMA VFVGESGDTD YEGLLGGLHK SVVLKGVSCS
1001: ACLHANRSYP LTDVISFESN NVVHASPDSD VRDALKKLEL LKD

Arabidopsis Description

SPS1Sucrose-phosphate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.