Factsheet for Bra002289.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009378.1-P
Bra028380.1-P
Bra030508.1-P
Bra033338.1-P
Bra038762.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20280.1	Bra030508.1-P	AT1G02680.1	21798944
AT5G20280.1	Bra033338.1-P	AT1G02680.1	21798944
AT5G20280.1	Bra028380.1-P	AT1G61870.1	21798944
AT5G20280.1	Bra038762.1-P	AT4G21705.1	21798944
AT5G20280.1	Bra009378.1-P	AT5G09320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92473	Canola	cytosol	92.51	99.79
CDY35815	Canola	cytosol	92.13	99.38
AT5G20280.1	Thale cress	cytosol	94.91	94.82
Bra020096.1-P	Field mustard	cytosol	93.09	94.17
VIT_11s0118g00200.t01	Wine grape	cytosol	77.83	77.09
KRH20178	Soybean	nucleus	78.22	76.96
KRH03629	Soybean	endoplasmic reticulum	78.12	76.86
PGSC0003DMT400071807	Potato	cytosol	75.82	74.95
Solyc07g007790.2.1	Tomato	cytosol	75.72	74.86
GSMUA_Achr4P06050_001	Banana	cytosol	70.92	69.78
Bra009830.1-P	Field mustard	nucleus	69.39	69.05
Bra006090.1-P	Field mustard	cytosol	68.52	68.72
GSMUA_Achr9P22510_001	Banana	cytosol	69.96	68.71
Os08t0301500-01	Rice	plasma membrane	68.04	66.51
TraesCS3D01G013000.1	Wheat	nucleus	67.27	65.58
OQU78428	Sorghum	nucleus	67.08	65.33
TraesCSU01G044500.2	Wheat	unclear	67.37	65.24
TraesCS3A01G015500.1	Wheat	golgi	66.89	65.08
Zm00001d050125_P002	Maize	nucleus	65.45	64.4
HORVU3Hr1G002280.1	Barley	plastid	67.37	62.12
Zm00001d015570_P002	Maize	cytosol	56.81	61.41
TraesCS6A01G144800.1	Wheat	cytoskeleton, cytosol, nucleus	56.43	61.0
TraesCS7B01G434300.1	Wheat	cytosol	56.81	60.97
TraesCS7A01G518200.1	Wheat	cytosol	56.81	60.91
TraesCS7D01G508100.1	Wheat	cytosol	56.72	60.87
KXG29640	Sorghum	cytosol	56.24	60.79
Zm00001d036749_P001	Maize	cytosol	56.62	60.51
TraesCS6D01G133800.1	Wheat	cytosol	55.85	60.37
KXG20466	Sorghum	cytosol	56.43	60.0
Os02t0184400-01	Rice	endoplasmic reticulum, golgi	56.53	58.26
HORVU6Hr1G028330.1	Barley	endoplasmic reticulum, golgi	56.81	57.36
TraesCS6B01G173000.2	Wheat	endoplasmic reticulum, plasma membrane	56.53	56.63
Bra033195.1-P	Field mustard	cytosol	54.89	54.63
HORVU7Hr1G115590.10	Barley	nucleus	52.11	54.35
Bra015364.1-P	Field mustard	cytosol	44.24	53.98
Zm00001d046595_P002	Maize	cytosol	50.58	53.89
Os06t0643800-01	Rice	plasma membrane	8.64	48.91
Zm00001d016399_P002	Maize	extracellular	6.72	44.59
Bra036282.1-P	Field mustard	cytosol, mitochondrion	16.6	21.33
Bra037432.1-P	Field mustard	cytosol	16.31	21.07
Bra002332.1-P	Field mustard	cytosol	14.97	19.85
Bra006578.1-P	Field mustard	cytosol	15.07	19.48
Bra039502.1-P	Field mustard	cytosol	14.49	18.04
Bra003845.1-P	Field mustard	cytosol	15.74	17.45
Bra015995.1-P	Field mustard	cytosol	15.64	17.29

Protein Annotations

KEGG:00500+2.4.1.14	MapMan:3.1.2.7	Gene3D:3.40.50.2000	EnsemblPlantsGene:Bra002289	EnsemblPlants:Bra002289.1	EnsemblPlants:Bra002289.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	GO:GO:0046524
InterPro:Glyco_trans_1	UniProt:M4CDK8	PFAM:PF00534	PFAM:PF00862	PFAM:PF05116	PANTHER:PTHR12526
PANTHER:PTHR12526:SF334	InterPro:SPP_N	InterPro:SPS_C	SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:SucrsPsyn_pln
TIGRFAMs:TIGR02468	UniParc:UPI0002544DDE	SEG:seg	:	:	:

Description

AT5G20280 (E=0.0) ATSPS1F | ATSPS1F (sucrose phosphate synthase 1F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups

Coordinates

chrA10:+:10464667..10469818

Molecular Weight (calculated)

117232.0 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.457

Length

1042 amino acids

Sequence
(BLAST)

0001: MAGNDWVNSY LEAILDVGQP LDDARPSLLL RERGRFTPSR YFVEEVITGY DETDLHRSWV KAVATRSPQE RNTRLENMCW RIWNLARQKK QHEEKEAQRL
0101: AKRRLERERG RREATADMSE EFSEGEKGDL VSDVSTHGTK SRLPRINSAE SMEIWANQQK GNKLYLVLIS LHGLIRGENM ELGRDSDTGG QVKYVVELAR
0201: ALGSMPGVYR VDLLTRQVSS PDVDWSYGEP TEMLTPRDSE DYSDEMGESS GAYIVRIPFG PKDKYIPKEL LWPHIAEFVD GAMNHIMQMS SVLGEQVGGG
0301: KPIWPSAIHG HYADAGDAAA LLSGALNVPM ILTGHSLGRD KLEQLLKQGR LSKEEINSTY KIMRRIEGEE LSLDVSEMVI TSTRQEIDEQ WRLYDGFDPI
0401: LERKLRARIK RNVSCYGRFM PRMVKIPPGM EFNHIVPHDG DMEDADGNEE HPTSRDPPIW AEIMRFFSNS RKPMILALAR PDPKKNITTL VKAFGECRPL
0501: RDLANLALIM GNRDGIDEMS STSSSVLLSV LKLIDKYDLY GQVAYPKHHK QSDVPDIYRL AAKSKGVFIN PAFIEPFGLT LIEAAAHGLP MVATKNGGPV
0601: DIHRVLDNGL LVDPHDQQSI SEALLKLVAD KQLWAKCRQN GLKNIHQFSW PEHCKTYLSR ITSFKPRHPQ WQSDDGGDNS EPESPSDSLR DIQDISLNLR
0701: FSFDGGSGND GSMNQEVSSM DRKSKIEAAV LNWSKGKDSR KMGSLEKSEV NSGKFPAVRR RKFIVVIALD FDGERDTLEA TRRILEAVEK ERAEGTVGFI
0801: LSTSLTISEI QSFLVSGGLN PNDFDAFVCN SGSDLYYTSV NSEDGPFVVD FYYHSHVEYR WGGEGLRKTL IRWASSVNEK KSENDEQIVT LAEHLSTDYC
0901: YTFAVKKPAA VPPVRELRKL LRIQALRCHV VYSQNGTRIN VIPVLASRIQ ALRYLFVRWG IDMAKMVVFV GESGDTDYEG LLGGLHKSVV LEGVSCSASN
1001: ALHANRSYPL TDVISLESNN VVHARVDSDV RDALKKLELL ED

Best Arabidopsis Sequence Match ( AT5G20280.1 )
(BLAST)

0001: MAGNDWVNSY LEAILDVGQG LDDARSSPSL LLRERGRFTP SRYFVEEVIT GYDETDLHRS WVKAVATRSP QERNTRLENM CWRIWNLARQ KKQHEEKEAQ
0101: RLAKRRLERE KGRREATADM SEEFSEGEKG DIISDISTHG ESTKPRLPRI NSAESMELWA SQQKGNKLYL VLISLHGLIR GENMELGRDS DTGGQVKYVV
0201: ELARALGSMP GVYRVDLLTR QVSSPDVDYS YGEPTEMLTP RDSEDFSDEM GESSGAYIVR IPFGPKDKYI PKELLWPHIP EFVDGAMSHI MQMSNVLGEQ
0301: VGVGKPIWPS AIHGHYADAG DATALLSGAL NVPMLLTGHS LGRDKLEQLL RQGRLSKEEI NSTYKIMRRI EGEELSLDVS EMVITSTRQE IDEQWRLYDG
0401: FDPILERKLR ARIKRNVSCY GRFMPRMVKI PPGMEFNHIV PHGGDMEDTD GNEEHPTSPD PPIWAEIMRF FSNSRKPMIL ALARPDPKKN ITTLVKAFGE
0501: CRPLRELANL ALIMGNRDGI DEMSSTSSSV LLSVLKLIDK YDLYGQVAYP KHHKQSDVPD IYRLAAKSKG VFINPAIIEP FGLTLIEAAA HGLPMVATKN
0601: GGPVDIHRVL DNGLLVDPHD QQSISEALLK LVADKHLWAK CRQNGLKNIH QFSWPEHCKT YLSRITSFKP RHPQWQSDDG GDNSEPESPS DSLRDIQDIS
0701: LNLKFSFDGS GNDNYMNQEG SSMDRKSKIE AAVQNWSKGK DSRKMGSLER SEVNSGKFPA VRRRKFIVVI ALDFDGEEDT LEATKRILDA VEKERAEGSV
0801: GFILSTSLTI SEVQSFLVSG GLNPNDFDAF ICNSGSDLHY TSLNNEDGPF VVDFYYHSHI EYRWGGEGLR KTLIRWASSL NEKKADNDEQ IVTLAEHLST
0901: DYCYTFTVKK PAAVPPVREL RKLLRIQALR CHVVYSQNGT RINVIPVLAS RIQALRYLFV RWGIDMAKMA VFVGESGDTD YEGLLGGLHK SVVLKGVSCS
1001: ACLHANRSYP LTDVISFESN NVVHASPDSD VRDALKKLEL LKD

Arabidopsis Description

SPS1Sucrose-phosphate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.