Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G144800.1 | Wheat | cytoskeleton, cytosol, nucleus | 92.4 | 99.69 |
| TraesCS6D01G133800.1 | Wheat | cytosol | 91.73 | 98.96 |
| HORVU6Hr1G028330.1 | Barley | endoplasmic reticulum, golgi | 95.67 | 96.41 |
| KXG29640 | Sorghum | cytosol | 83.75 | 90.35 |
| Zm00001d015570_P002 | Maize | cytosol | 83.08 | 89.63 |
| Os02t0184400-01 | Rice | endoplasmic reticulum, golgi | 85.67 | 88.13 |
| TraesCS7B01G434300.1 | Wheat | cytosol | 77.12 | 82.6 |
| CDX70382 | Canola | cytosol | 57.31 | 61.95 |
| CDX88168 | Canola | nucleus | 57.02 | 61.77 |
| GSMUA_Achr4P06050_001 | Banana | cytosol | 62.69 | 61.57 |
| GSMUA_Achr9P22510_001 | Banana | cytosol | 62.79 | 61.55 |
| CDX80498 | Canola | cytosol | 57.21 | 61.53 |
| CDX92473 | Canola | cytosol | 56.35 | 60.66 |
| CDY35815 | Canola | cytosol | 56.25 | 60.56 |
| CDY45096 | Canola | cytosol | 55.87 | 59.77 |
| VIT_11s0118g00200.t01 | Wine grape | cytosol | 59.52 | 58.84 |
| KRH03629 | Soybean | endoplasmic reticulum | 59.42 | 58.36 |
| KRH20178 | Soybean | nucleus | 59.23 | 58.17 |
| VIT_04s0008g05730.t01 | Wine grape | cytosol | 58.27 | 57.28 |
| PGSC0003DMT400071807 | Potato | cytosol | 57.98 | 57.21 |
| CDX78411 | Canola | cytosol | 57.02 | 57.07 |
| Solyc07g007790.2.1 | Tomato | cytosol | 57.79 | 57.02 |
| Bra009830.1-P | Field mustard | nucleus | 57.4 | 57.02 |
| Bra006090.1-P | Field mustard | cytosol | 56.92 | 56.98 |
| Bra002289.1-P | Field mustard | cytosol | 56.63 | 56.53 |
| AT5G11110.1 | Thale cress | cytosol | 56.83 | 56.45 |
| AT5G20280.1 | Thale cress | cytosol | 56.25 | 56.09 |
| Bra020096.1-P | Field mustard | cytosol | 55.38 | 55.92 |
| Solyc08g042000.2.1 | Tomato | nucleus | 55.67 | 55.41 |
| TraesCS3B01G461800.1 | Wheat | nucleus | 46.92 | 45.65 |
| TraesCS4B01G091100.1 | Wheat | cytosol | 44.33 | 43.49 |
| PGSC0003DMT400076855 | Potato | cytosol, peroxisome, plastid | 21.54 | 42.91 |
| TraesCS4B01G167500.1 | Wheat | cytosol | 14.42 | 18.54 |
| TraesCS7B01G063400.1 | Wheat | mitochondrion | 14.62 | 18.4 |
| TraesCS2B01G194200.1 | Wheat | golgi | 14.52 | 18.17 |
| TraesCS6B01G466600.1 | Wheat | cytosol | 14.62 | 17.51 |
| TraesCS7B01G482200.1 | Wheat | cytosol | 14.13 | 17.07 |
| TraesCS2B01G424300.1 | Wheat | cytosol | 14.04 | 16.9 |
Protein Annotations
| KEGG:00500+2.4.1.14 | MapMan:3.1.2.7 | Gene3D:3.40.50.1000 | Gene3D:3.40.50.2000 | Gene3D:3.90.1070.10 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005975 | GO:GO:0005985 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016157 | GO:GO:0016740 | GO:GO:0046524 | InterPro:Glyco_trans_1 | InterPro:HAD_sf |
| InterPro:IPR023214 | PFAM:PF00534 | PFAM:PF00862 | PFAM:PF05116 | PANTHER:PTHR12526 | PANTHER:PTHR12526:SF347 |
| InterPro:SPP_N | InterPro:SPS_C | SUPFAM:SSF53756 | InterPro:Sucrose_synth | InterPro:SucrsPsyn_pln | TIGRFAMs:TIGR02468 |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6B01G173000 | EnsemblPlants:TraesCS6B01G173000.2 | TIGR:cd03800 | TIGR:cd16419 | SEG:seg |
Description
No Description!
Coordinates
chr6B:-:185673736..185681062
Molecular Weight (calculated)
116631.0 Da
IEP (calculated)
7.804
GRAVY (calculated)
-0.247
Length
1040 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYQTVSLHYY YQAAIFFFLL SCFVLVIANC TLSFRLVISP HFLLLPTSLF WLSLHSSHPP ISPARGGGGG CGSAAKMVGN DNWINSYLDA ILDAGKSAIG
0101: GDRPSLLLRE RGHFSPARYF VEEVITGYDE TDLYKTWLRA NAMRSPQERN TRLENMTWRI WNLARKKKEL EKEEACRLLK RHPETEKTRI DATADMSEDL
0201: FEGEKGEDAG DPSVAYGDST TGVSPKTSSV DKLYIVLISL HGLVRGENME LGRDSDTGGQ VKYVVEFAKA LSSSPGVYRV DLLTRQILAP NFDRSYGEPA
0301: EMLVSTTFKN SKQEKGENSG GYIIRIPFGP RDMYLTKERL WPFIQEFVDG ALSHIVRMSK TIGEEIGCGH PVWPAVIHGH YASAGIAATL LSGALNLPMA
0401: FTGHFLGKDK LEGLLKQGRQ SREEINMTYK IMRRIEAEEL SLDASEIVIA STRQEIEEQW NLYDGFEVIL ARKLRARVKR GANCYGRYMP RMVIIPPGVE
0501: FGHIIHDFDI DGEEENHGPA SEDPPIWSQI MRFFTNPRKP MILAVARPYP EKNITTLVKA FGECRPLREL ANLTLIMGNR EAISKMHNTS ASVLTSVLTL
0601: IDEYDLYGQV AYPKHHKHSE VPDIYRLATR TKGAFVNVAY FEQFGVTLIE AAMNGLPVIA TKNGAPVEIH QVLNNGLLVD PHDQNAIADA LYKLLSEKQL
0701: WSRCRENGLK NIHQFSWPEH CKNHLSRILT LGMRSPAVGS EEERSKAPIS GRKHIIVISV DSVNKENLVR IIRNAIEAAH TENTPASTGF VLSTSLTISE
0801: ICSLLVSVGM HPAGFDAFIC NSGSSIYYPS YSGNTPSNSR VTHVIDRNHQ SHIEYRWGGE GLRKYLVKWA TSVVERKGRI ERQMIFEDSE HSSTYCLAFK
0901: VVNPNHLPPL KELRKLMRIQ SLRCNALYNH SATRLSVTPI HASRSQAIRY LFVRWGIELP NIVVMVGESG DSDYEELLGG LHRTIILKGD FNIAANRIHT
1001: VRRYPLQDVV ALDSSNIIEV QGCTTEDIKS ALRQIGVPTQ
0101: GDRPSLLLRE RGHFSPARYF VEEVITGYDE TDLYKTWLRA NAMRSPQERN TRLENMTWRI WNLARKKKEL EKEEACRLLK RHPETEKTRI DATADMSEDL
0201: FEGEKGEDAG DPSVAYGDST TGVSPKTSSV DKLYIVLISL HGLVRGENME LGRDSDTGGQ VKYVVEFAKA LSSSPGVYRV DLLTRQILAP NFDRSYGEPA
0301: EMLVSTTFKN SKQEKGENSG GYIIRIPFGP RDMYLTKERL WPFIQEFVDG ALSHIVRMSK TIGEEIGCGH PVWPAVIHGH YASAGIAATL LSGALNLPMA
0401: FTGHFLGKDK LEGLLKQGRQ SREEINMTYK IMRRIEAEEL SLDASEIVIA STRQEIEEQW NLYDGFEVIL ARKLRARVKR GANCYGRYMP RMVIIPPGVE
0501: FGHIIHDFDI DGEEENHGPA SEDPPIWSQI MRFFTNPRKP MILAVARPYP EKNITTLVKA FGECRPLREL ANLTLIMGNR EAISKMHNTS ASVLTSVLTL
0601: IDEYDLYGQV AYPKHHKHSE VPDIYRLATR TKGAFVNVAY FEQFGVTLIE AAMNGLPVIA TKNGAPVEIH QVLNNGLLVD PHDQNAIADA LYKLLSEKQL
0701: WSRCRENGLK NIHQFSWPEH CKNHLSRILT LGMRSPAVGS EEERSKAPIS GRKHIIVISV DSVNKENLVR IIRNAIEAAH TENTPASTGF VLSTSLTISE
0801: ICSLLVSVGM HPAGFDAFIC NSGSSIYYPS YSGNTPSNSR VTHVIDRNHQ SHIEYRWGGE GLRKYLVKWA TSVVERKGRI ERQMIFEDSE HSSTYCLAFK
0901: VVNPNHLPPL KELRKLMRIQ SLRCNALYNH SATRLSVTPI HASRSQAIRY LFVRWGIELP NIVVMVGESG DSDYEELLGG LHRTIILKGD FNIAANRIHT
1001: VRRYPLQDVV ALDSSNIIEV QGCTTEDIKS ALRQIGVPTQ
0001: MARNDWINSY LEAILDVGTS KKKRFESNSK IVQKLGDINS KDHQEKVFGD MNGKDHQEKV FSPIKYFVEE VVNSFDESDL YKTWIKVIAT RNTRERSNRL
0101: ENICWRIWHL ARKKKQIVWD DGVRLSKRRI EREQGRNDAE EDLLSELSEG EKDKNDGEKE KSEVVTTLEP PRDHMPRIRS EMQIWSEDDK SSRNLYIVLI
0201: SMHGLVRGEN MELGRDSDTG GQVKYVVELA RALANTEGVH RVDLLTRQIS SPEVDYSYGE PVEMLSCPPE GSDSCGSYII RIPCGSRDKY IPKESLWPHI
0301: PEFVDGALNH IVSIARSLGE QVNGGKPIWP YVIHGHYADA GEVAAHLAGA LNVPMVLTGH SLGRNKFEQL LQQGRITRED IDRTYKIMRR IEAEEQSLDA
0401: AEMVVTSTRQ EIDAQWGLYD GFDIKLERKL RVRRRRGVSC LGRYMPRMVV IPPGMDFSYV LTQDSQEPDG DLKSLIGPDR NQIKKPVPPI WSEIMRFFSN
0501: PHKPTILALS RPDHKKNVTT LVKAFGECQP LRELANLVLI LGNRDDIEEM PNSSSVVLMN VLKLIDQYDL YGQVAYPKHH KQSEVPDIYR LAAKTKGVFI
0601: NPALVEPFGL TLIEAAAYGL PIVATRNGGP VDIVKALNNG LLVDPHDQQA ISDALLKLVA NKHLWAECRK NGLKNIHRFS WPEHCRNYLS HVEHCRNRHP
0701: TSSLDIMKVP EELTSDSLRD VDDISLRFST EGDFTLNGEL DAGTRQKKLV DAISQMNSMK GCSAAIYSPG RRQMLFVVAV DSYDDNGNIK ANLNEIIKNM
0801: IKAADLTSGK GKIGFVLASG SSLQEVVDIT QKNLINLEDF DAIVCNSGSE IYYPWRDMMV DADYETHVEY KWPGESIRSV ILRLICTEPA AEDDITEYAS
0901: SCSTRCYAIS VKQGVKTRRV DDLRQRLRMR GLRCNIVYTH AATRLNVIPL CASRIQALRY LSIRWGIDMS KTVFFLGEKG DTDYEDLLGG LHKTIILKGV
1001: VGSDSEKLLR SEENFKREDA VPQESPNISY VKENGGSQEI MSTLEAYGIK
0101: ENICWRIWHL ARKKKQIVWD DGVRLSKRRI EREQGRNDAE EDLLSELSEG EKDKNDGEKE KSEVVTTLEP PRDHMPRIRS EMQIWSEDDK SSRNLYIVLI
0201: SMHGLVRGEN MELGRDSDTG GQVKYVVELA RALANTEGVH RVDLLTRQIS SPEVDYSYGE PVEMLSCPPE GSDSCGSYII RIPCGSRDKY IPKESLWPHI
0301: PEFVDGALNH IVSIARSLGE QVNGGKPIWP YVIHGHYADA GEVAAHLAGA LNVPMVLTGH SLGRNKFEQL LQQGRITRED IDRTYKIMRR IEAEEQSLDA
0401: AEMVVTSTRQ EIDAQWGLYD GFDIKLERKL RVRRRRGVSC LGRYMPRMVV IPPGMDFSYV LTQDSQEPDG DLKSLIGPDR NQIKKPVPPI WSEIMRFFSN
0501: PHKPTILALS RPDHKKNVTT LVKAFGECQP LRELANLVLI LGNRDDIEEM PNSSSVVLMN VLKLIDQYDL YGQVAYPKHH KQSEVPDIYR LAAKTKGVFI
0601: NPALVEPFGL TLIEAAAYGL PIVATRNGGP VDIVKALNNG LLVDPHDQQA ISDALLKLVA NKHLWAECRK NGLKNIHRFS WPEHCRNYLS HVEHCRNRHP
0701: TSSLDIMKVP EELTSDSLRD VDDISLRFST EGDFTLNGEL DAGTRQKKLV DAISQMNSMK GCSAAIYSPG RRQMLFVVAV DSYDDNGNIK ANLNEIIKNM
0801: IKAADLTSGK GKIGFVLASG SSLQEVVDIT QKNLINLEDF DAIVCNSGSE IYYPWRDMMV DADYETHVEY KWPGESIRSV ILRLICTEPA AEDDITEYAS
0901: SCSTRCYAIS VKQGVKTRRV DDLRQRLRMR GLRCNIVYTH AATRLNVIPL CASRIQALRY LSIRWGIDMS KTVFFLGEKG DTDYEDLLGG LHKTIILKGV
1001: VGSDSEKLLR SEENFKREDA VPQESPNISY VKENGGSQEI MSTLEAYGIK
Arabidopsis Description
SPS4Probable sucrose-phosphate synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JLK2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.