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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69912
CDX89953
CDX94049
CDX98698
CDY07260
CDY15256
CDY15437
CDY21574
CDY25328
CDY47165
CDY71056

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G20280.1 CDX89953 AT1G02680.1 21798944
AT5G20280.1 CDY15256 AT1G02680.1 21798944
AT5G20280.1 CDY15437 AT1G02680.1 21798944
AT5G20280.1 CDY71056 AT1G02680.1 21798944
AT5G20280.1 CDY07260 AT1G61870.1 21798944
AT5G20280.1 CDY25328 AT1G61870.1 21798944
AT5G20280.1 CDY47165 AT1G61870.1 21798944
AT5G20280.1 CDX94049 AT4G21705.1 21798944
AT5G20280.1 CDX98698 AT4G21705.1 21798944
AT5G20280.1 CDX69912 AT5G09320.1 21798944
AT5G20280.1 CDY21574 AT5G09320.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92473 Canola cytosol 93.62 94.2
CDY35815 Canola cytosol 93.0 93.58
Bra020096.1-P Field mustard cytosol 96.91 91.46
AT5G20280.1 Thale cress cytosol 92.28 86.0
VIT_11s0118g00200.t01 Wine grape cytosol 77.37 71.48
KRH20178 Soybean nucleus 77.06 70.73
KRH03629 Soybean endoplasmic reticulum 76.85 70.54
PGSC0003DMT400071807 Potato cytosol 75.93 70.02
Solyc07g007790.2.1 Tomato cytosol 75.72 69.83
CDX70382 Canola cytosol 68.83 69.54
CDX80498 Canola cytosol 68.72 69.08
CDX88168 Canola nucleus 68.0 68.85
GSMUA_Achr4P06050_001 Banana cytosol 71.5 65.63
CDX78411 Canola cytosol 69.44 64.97
GSMUA_Achr9P22510_001 Banana cytosol 70.68 64.75
Os08t0301500-01 Rice plasma membrane 68.72 62.66
OQU78428 Sorghum nucleus 67.7 61.5
TraesCS3D01G013000.1 Wheat nucleus 67.49 61.37
Zm00001d050125_P002 Maize nucleus 66.67 61.19
TraesCS3A01G015500.1 Wheat golgi 67.28 61.06
TraesCSU01G044500.2 Wheat unclear 67.49 60.97
Zm00001d015570_P002 Maize cytosol 60.19 60.68
TraesCS7B01G434300.1 Wheat cytosol 60.49 60.56
TraesCS7A01G518200.1 Wheat cytosol 60.49 60.49
TraesCS7D01G508100.1 Wheat cytosol 60.39 60.45
TraesCS6A01G144800.1 Wheat cytoskeleton, cytosol, nucleus 59.67 60.17
KXG29640 Sorghum cytosol 59.47 59.96
TraesCS6D01G133800.1 Wheat cytosol 59.05 59.54
Zm00001d036749_P001 Maize cytosol 59.57 59.38
KXG20466 Sorghum cytosol 59.47 58.98
CDX73329 Canola cytosol 4.53 57.89
HORVU3Hr1G002280.1 Barley plastid 67.18 57.79
Os02t0184400-01 Rice endoplasmic reticulum, golgi 59.88 57.57
CDX94270 Canola nucleus 27.88 57.29
HORVU6Hr1G028330.1 Barley endoplasmic reticulum, golgi 59.98 56.49
TraesCS6B01G173000.2 Wheat endoplasmic reticulum, plasma membrane 59.77 55.87
HORVU7Hr1G115590.10 Barley nucleus 55.45 53.95
CDX89776 Canola cytosol 58.02 53.01
CDY18270 Canola cytosol 57.92 52.86
Zm00001d046595_P002 Maize cytosol 53.19 52.86
CDY41124 Canola cytosol 55.86 51.86
Os06t0643800-01 Rice plasma membrane 9.57 50.54
Zm00001d016399_P002 Maize extracellular 6.58 40.76
CDY69825 Canola cytosol 6.79 37.93
CDX86250 Canola cytosol 16.87 20.81
CDY52781 Canola mitochondrion 17.18 20.59
CDX85398 Canola cytosol 17.08 20.57
CDX87785 Canola cytosol 3.4 20.5
CDY22042 Canola cytosol, mitochondrion 16.98 20.35
CDX88838 Canola endoplasmic reticulum, golgi 15.54 20.32
CDY16569 Canola cytosol 15.84 19.13
CDX92432 Canola cytosol 15.84 19.13
CDX70945 Canola cytosol 15.84 19.11
CDX68228 Canola cytosol 16.77 17.34
CDY38565 Canola cytosol 14.92 17.14
CDY11107 Canola cytosol 16.56 17.13
CDY26996 Canola cytosol 14.81 17.02
CDX72985 Canola cytosol 16.26 16.92
CDX96472 Canola cytosol 16.26 16.9
CDY46981 Canola cytosol, nucleus, plastid 5.66 16.04
CDY71780 Canola cytosol, extracellular 4.63 12.64
Protein Annotations
KEGG:00500+2.4.1.14MapMan:3.1.2.7Gene3D:3.40.50.2000GO:A0A078I5D5UniProt:A0A078I5D5EnsemblPlants:CDY45096
ProteinID:CDY45096ProteinID:CDY45096.1GO:GO:0003674GO:GO:0003824GO:GO:0005975GO:GO:0005985
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016157GO:GO:0016740GO:GO:0016757
GO:GO:0046524EnsemblPlantsGene:GSBRNA2T00081377001InterPro:Glyco_trans_1PFAM:PF00534PFAM:PF00862PFAM:PF05116
PANTHER:PTHR12526PANTHER:PTHR12526:SF334MetaCyc:PWY-7238MetaCyc:PWY-7347InterPro:SPP_NInterPro:SPS_C
SUPFAM:SSF53756InterPro:Sucrose_synthInterPro:SucrsPsyn_plnTIGRFAMs:TIGR02468UniPathway:UPA00371UniParc:UPI0004EDD8C1
SEG:seg:::::
Description
BnaA02g04800DBnaA02g04800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5D5]
Coordinates
chrLK032613:+:163725..169271
Molecular Weight (calculated)
109259.0 Da
IEP (calculated)
5.572
GRAVY (calculated)
-0.412
Length
972 amino acids
Sequence
(BLAST)
001: MAGNDWVNSY LEAILDVGQP LDDARPSLLL RERGRFTPSR YFVEEVITGY DETDLHKSWT KAVATRSTQE RNTRLENMCW RIWNLARQKK QHEEKEAQRL
101: AKRPLERERG RREITDDMSE EFSEGEKGDI VSDVSTHGIK SRLARINSAE SMEIWANQQK GNKLYLVLIS LHGLIRGENM ELGRDSDTGG QVKYVVELAR
201: ALGSMPGVYR VDLLTRQVSS PDVDYSYGEP TEMLTPRDSE DLSDEMGESS GAYIVRIPFG PKDKYIPKEL LWPHIAEFVD GAMSHIIQMS NVLGEQVVGG
301: GSGKPIWPSA IHGHYADAGD AAALLSGALN VPMILTGHSL GRDKLEQLLK QGRLSKEEIN STYKIMRRIE GEELSLDVSE MVITSTRQEI DEQWRLYDGF
401: DPILERKLRA RIKRNVSCYG RFMPRMVKIP PGMEFNHIVP HDGDMEDADG NEEHPTSRDP PIWAEIMRFF SNSRKPMILA LARPDPKKNI TTLVKAFGEC
501: RPLRELANLA LIMGNRDGID EMSSTSSSVL LSVLKLVDKY DLYGQVAYPK HHKQSDVPDI YRLAAKSKGV FINPAFIEPF GLTLIEAAAY GLPMVATKNG
601: GPVDIHRILD NGLLVDPHDQ QSLSEALLKL VADKHLWAKC RQNGLKNIHQ FSWPEHCKTY LSRITSFKPR HPQWQSDDDD DDGDNSEPEK FIFVIALDFD
701: GEKDTLAATR RILEAVEKER ADGSVGFILS TSLKISEITS FLESGGLSPN DFDAFVCNSG SDLYYTSLSS EDGPFVVDFY YHSHVEYRWG GEGLRKTLIR
801: WASSVNEKRS GDDDDEQIVT LAEHLSTDYC YTFAVKKPAA VPPVRELRKV LRIQALRCHV VYSQNGTRIN VIPVLASRVQ ALRYLFVRWG IDLANMVVFV
901: GESGDTDYEG LLGGLHKSVV LEGVSCSASN ALHTNRSYPL TDVISLESNN VVHAPLDSDV RDALKKLDLL ND
Best Arabidopsis Sequence Match ( AT5G20280.1 )
(BLAST)
0001: MAGNDWVNSY LEAILDVGQG LDDARSSPSL LLRERGRFTP SRYFVEEVIT GYDETDLHRS WVKAVATRSP QERNTRLENM CWRIWNLARQ KKQHEEKEAQ
0101: RLAKRRLERE KGRREATADM SEEFSEGEKG DIISDISTHG ESTKPRLPRI NSAESMELWA SQQKGNKLYL VLISLHGLIR GENMELGRDS DTGGQVKYVV
0201: ELARALGSMP GVYRVDLLTR QVSSPDVDYS YGEPTEMLTP RDSEDFSDEM GESSGAYIVR IPFGPKDKYI PKELLWPHIP EFVDGAMSHI MQMSNVLGEQ
0301: VGVGKPIWPS AIHGHYADAG DATALLSGAL NVPMLLTGHS LGRDKLEQLL RQGRLSKEEI NSTYKIMRRI EGEELSLDVS EMVITSTRQE IDEQWRLYDG
0401: FDPILERKLR ARIKRNVSCY GRFMPRMVKI PPGMEFNHIV PHGGDMEDTD GNEEHPTSPD PPIWAEIMRF FSNSRKPMIL ALARPDPKKN ITTLVKAFGE
0501: CRPLRELANL ALIMGNRDGI DEMSSTSSSV LLSVLKLIDK YDLYGQVAYP KHHKQSDVPD IYRLAAKSKG VFINPAIIEP FGLTLIEAAA HGLPMVATKN
0601: GGPVDIHRVL DNGLLVDPHD QQSISEALLK LVADKHLWAK CRQNGLKNIH QFSWPEHCKT YLSRITSFKP RHPQWQSDDG GDNSEPESPS DSLRDIQDIS
0701: LNLKFSFDGS GNDNYMNQEG SSMDRKSKIE AAVQNWSKGK DSRKMGSLER SEVNSGKFPA VRRRKFIVVI ALDFDGEEDT LEATKRILDA VEKERAEGSV
0801: GFILSTSLTI SEVQSFLVSG GLNPNDFDAF ICNSGSDLHY TSLNNEDGPF VVDFYYHSHI EYRWGGEGLR KTLIRWASSL NEKKADNDEQ IVTLAEHLST
0901: DYCYTFTVKK PAAVPPVREL RKLLRIQALR CHVVYSQNGT RINVIPVLAS RIQALRYLFV RWGIDMAKMA VFVGESGDTD YEGLLGGLHK SVVLKGVSCS
1001: ACLHANRSYP LTDVISFESN NVVHASPDSD VRDALKKLEL LKD
Arabidopsis Description
SPS1Sucrose-phosphate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BT0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.