CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69912
CDX89953
CDX94049
CDX98698
CDY07260
CDY15256
CDY15437
CDY21574
CDY25328
CDY47165
CDY71056

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20280.1	CDX89953	AT1G02680.1	21798944
AT5G20280.1	CDY15256	AT1G02680.1	21798944
AT5G20280.1	CDY15437	AT1G02680.1	21798944
AT5G20280.1	CDY71056	AT1G02680.1	21798944
AT5G20280.1	CDY07260	AT1G61870.1	21798944
AT5G20280.1	CDY25328	AT1G61870.1	21798944
AT5G20280.1	CDY47165	AT1G61870.1	21798944
AT5G20280.1	CDX94049	AT4G21705.1	21798944
AT5G20280.1	CDX98698	AT4G21705.1	21798944
AT5G20280.1	CDX69912	AT5G09320.1	21798944
AT5G20280.1	CDY21574	AT5G09320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35815	Canola	cytosol	99.38	99.38
CDY45096	Canola	cytosol	94.2	93.62
Bra002289.1-P	Field mustard	cytosol	99.79	92.51
AT5G20280.1	Thale cress	cytosol	95.03	88.02
VIT_11s0118g00200.t01	Wine grape	cytosol	79.09	72.62
KRH20178	Soybean	nucleus	79.4	72.43
KRH03629	Soybean	endoplasmic reticulum	79.3	72.33
PGSC0003DMT400071807	Potato	cytosol	77.54	71.06
Solyc07g007790.2.1	Tomato	cytosol	77.23	70.78
CDX80498	Canola	cytosol	70.7	70.63
CDX88168	Canola	nucleus	70.19	70.62
CDX70382	Canola	cytosol	70.29	70.58
GSMUA_Achr4P06050_001	Banana	cytosol	73.29	66.86
GSMUA_Achr9P22510_001	Banana	cytosol	72.26	65.79
CDX78411	Canola	cytosol	70.6	65.64
Os08t0301500-01	Rice	plasma membrane	70.29	63.7
TraesCS3D01G013000.1	Wheat	nucleus	69.36	62.68
OQU78428	Sorghum	nucleus	69.25	62.52
TraesCS3A01G015500.1	Wheat	golgi	69.05	62.28
TraesCSU01G044500.2	Wheat	unclear	69.36	62.27
Zm00001d050125_P002	Maize	nucleus	67.7	61.76
Zm00001d015570_P002	Maize	cytosol	61.08	61.2
TraesCS6A01G144800.1	Wheat	cytoskeleton, cytosol, nucleus	60.56	60.68
TraesCS7A01G518200.1	Wheat	cytosol	60.97	60.6
KXG29640	Sorghum	cytosol	60.46	60.58
TraesCS7D01G508100.1	Wheat	cytosol	60.87	60.56
TraesCS7B01G434300.1	Wheat	cytosol	60.87	60.56
Zm00001d036749_P001	Maize	cytosol	60.77	60.21
TraesCS6D01G133800.1	Wheat	cytosol	59.94	60.06
KXG20466	Sorghum	cytosol	60.56	59.69
HORVU3Hr1G002280.1	Barley	plastid	69.25	59.2
Os02t0184400-01	Rice	endoplasmic reticulum, golgi	60.77	58.06
CDX73329	Canola	cytosol	4.55	57.89
CDX94270	Canola	nucleus	28.16	57.51
HORVU6Hr1G028330.1	Barley	endoplasmic reticulum, golgi	60.97	57.07
TraesCS6B01G173000.2	Wheat	endoplasmic reticulum, plasma membrane	60.66	56.35
HORVU7Hr1G115590.10	Barley	nucleus	55.8	53.95
CDX89776	Canola	cytosol	59.11	53.67
Zm00001d046595_P002	Maize	cytosol	54.24	53.58
CDY18270	Canola	cytosol	59.01	53.52
CDY41124	Canola	cytosol	56.42	52.05
Os06t0643800-01	Rice	plasma membrane	9.32	48.91
Zm00001d016399_P002	Maize	extracellular	7.04	43.31
CDY69825	Canola	cytosol	7.04	39.08
CDX87785	Canola	cytosol	3.62	21.74
CDY52781	Canola	mitochondrion	17.81	21.21
CDX86250	Canola	cytosol	17.18	21.07
CDY22042	Canola	cytosol, mitochondrion	17.6	20.96
CDX88838	Canola	endoplasmic reticulum, golgi	15.84	20.59
CDX85398	Canola	cytosol	17.18	20.57
CDX92432	Canola	cytosol	16.15	19.38
CDY16569	Canola	cytosol	16.15	19.38
CDX70945	Canola	cytosol	16.15	19.35
CDY38565	Canola	cytosol	15.53	17.73
CDY26996	Canola	cytosol	15.42	17.61
CDX68228	Canola	cytosol	16.98	17.45
CDY11107	Canola	cytosol	16.87	17.34
CDX72985	Canola	cytosol	16.67	17.24
CDX96472	Canola	cytosol	16.67	17.22
CDY46981	Canola	cytosol, nucleus, plastid	5.9	16.62
CDY71780	Canola	cytosol, extracellular	4.87	13.2

Protein Annotations

KEGG:00500+2.4.1.14	MapMan:3.1.2.7	Gene3D:3.40.50.2000	GO:A0A078DYU6	EnsemblPlants:CDX92473	ProteinID:CDX92473
ProteinID:CDX92473.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0046524
EnsemblPlantsGene:GSBRNA2T00154245001	InterPro:Glyco_trans_1	PFAM:PF00534	PFAM:PF00862	PFAM:PF05116	PANTHER:PTHR12526
PANTHER:PTHR12526:SF334	MetaCyc:PWY-7238	MetaCyc:PWY-7347	InterPro:SPP_N	InterPro:SPS_C	SUPFAM:SSF53756
InterPro:Sucrose_synth	InterPro:SucrsPsyn_pln	TIGRFAMs:TIGR02468	UniPathway:UPA00371	UniParc:UPI0004EE6A60	SEG:seg

Description

BnaA10g15120D

Coordinates

chrLK031872:+:832028..837557

Molecular Weight (calculated)

109024.0 Da

IEP (calculated)

6.736

GRAVY (calculated)

-0.404

Length

966 amino acids

Sequence
(BLAST)

001: MAGNDWVNSY LEAILDVGQP LDDARPSLLL RERGRFTPSR YFVEEVITGY DETDLHRSWV KAVATRSPQE RNTRLENMCW RIWNLARQKK QHEEKEAQRL
101: AKRRLERERG RREATADMSE EFSEGEKGDL VSDVSTHGTK SRLARINSAE SMEIWANQQK GNKLYLVLIS LHGLIRGENM ELGRDSDTGG QVKYVVELAR
201: ALGSMPGVYR VDLLTRQVSS PDVDWSYGEP TEMLTPRDSE DYSDEMGESS GAYIVRIPFG PKDKYIPKEL LWPHIAEFVD GAMNHIMQMS SVLGEQVGGG
301: KPIWPSAIHG HYADAGDAAA LLSGALNVPM ILTGHSLGRD KLEQLLKQGR LSKEEINSTY KIMRRIEGEE LSLDVSEMVI TSTRQEIDEQ WRLYDGFDPI
401: LERKLRARIK RNVSCYGRFM PRMVKIPPGM EFNHIVPHDG DMEDADGNEE HPTSRDPPIW AEIMRFFSNS RKPMILALAR PDPKKNITTL VKAFGECRPL
501: RDLANLALIM GNRDGIDEMS STSSSVLLSV LKLIDKYDLY GQVAYPKHHK QSDVPDIYRL AAKSKGVFIN PAFIEPFGLT LIEAAAHGLP MVATKNGGPV
601: DIHRVLDNGL LVDPHDQQSI SEALLKLVAD KQLWAKCRQN GLKNIHQFSW PEHCKTYLSR ITSFKPRHPQ WQKVNSGKFP AVRRRKFIVV IALDFDGERD
701: TLEATRRILE AVEKERAEGT VGFILSTSLT ISEIQSFLVS GGLNPNDFDA FVCNSGSDLY YTSVNSEDGP FVVDFYYHSH VEYRWGGEGL RKTLIRWASS
801: VNEKKSENDE QIVTLAEHLS TDYCYTFAVK KPAAVPPVRE LRKLLRIQAL RCHVVYSQNG TRINVIPVLA SRIQALRYLF VRWGIDMAKM VVFVGESGDT
901: DYEGLLGGLH KSVVLEGVSC SASNALHANR SYPLTDVISL ESNNVVHARV DSDVRDALKK LELLED

Best Arabidopsis Sequence Match ( AT5G20280.1 )
(BLAST)

0001: MAGNDWVNSY LEAILDVGQG LDDARSSPSL LLRERGRFTP SRYFVEEVIT GYDETDLHRS WVKAVATRSP QERNTRLENM CWRIWNLARQ KKQHEEKEAQ
0101: RLAKRRLERE KGRREATADM SEEFSEGEKG DIISDISTHG ESTKPRLPRI NSAESMELWA SQQKGNKLYL VLISLHGLIR GENMELGRDS DTGGQVKYVV
0201: ELARALGSMP GVYRVDLLTR QVSSPDVDYS YGEPTEMLTP RDSEDFSDEM GESSGAYIVR IPFGPKDKYI PKELLWPHIP EFVDGAMSHI MQMSNVLGEQ
0301: VGVGKPIWPS AIHGHYADAG DATALLSGAL NVPMLLTGHS LGRDKLEQLL RQGRLSKEEI NSTYKIMRRI EGEELSLDVS EMVITSTRQE IDEQWRLYDG
0401: FDPILERKLR ARIKRNVSCY GRFMPRMVKI PPGMEFNHIV PHGGDMEDTD GNEEHPTSPD PPIWAEIMRF FSNSRKPMIL ALARPDPKKN ITTLVKAFGE
0501: CRPLRELANL ALIMGNRDGI DEMSSTSSSV LLSVLKLIDK YDLYGQVAYP KHHKQSDVPD IYRLAAKSKG VFINPAIIEP FGLTLIEAAA HGLPMVATKN
0601: GGPVDIHRVL DNGLLVDPHD QQSISEALLK LVADKHLWAK CRQNGLKNIH QFSWPEHCKT YLSRITSFKP RHPQWQSDDG GDNSEPESPS DSLRDIQDIS
0701: LNLKFSFDGS GNDNYMNQEG SSMDRKSKIE AAVQNWSKGK DSRKMGSLER SEVNSGKFPA VRRRKFIVVI ALDFDGEEDT LEATKRILDA VEKERAEGSV
0801: GFILSTSLTI SEVQSFLVSG GLNPNDFDAF ICNSGSDLHY TSLNNEDGPF VVDFYYHSHI EYRWGGEGLR KTLIRWASSL NEKKADNDEQ IVTLAEHLST
0901: DYCYTFTVKK PAAVPPVREL RKLLRIQALR CHVVYSQNGT RINVIPVLAS RIQALRYLFV RWGIDMAKMA VFVGESGDTD YEGLLGGLHK SVVLKGVSCS
1001: ACLHANRSYP LTDVISFESN NVVHASPDSD VRDALKKLEL LKD

Arabidopsis Description

SPS1Sucrose-phosphate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.