Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G144800.1 | Wheat | cytoskeleton, cytosol, nucleus | 92.44 | 98.96 |
| TraesCS6D01G133800.1 | Wheat | cytosol | 91.76 | 98.24 |
| TraesCS6B01G173000.2 | Wheat | endoplasmic reticulum, plasma membrane | 96.41 | 95.67 |
| KXG29640 | Sorghum | cytosol | 84.4 | 90.35 |
| Zm00001d015570_P002 | Maize | cytosol | 83.62 | 89.52 |
| Os02t0184400-01 | Rice | endoplasmic reticulum, golgi | 86.53 | 88.33 |
| HORVU7Hr1G115590.10 | Barley | nucleus | 71.12 | 73.47 |
| CDX70382 | Canola | cytosol | 57.95 | 62.16 |
| CDX88168 | Canola | nucleus | 57.75 | 62.08 |
| CDX80498 | Canola | cytosol | 57.95 | 61.84 |
| GSMUA_Achr4P06050_001 | Banana | cytosol | 63.37 | 61.76 |
| GSMUA_Achr9P22510_001 | Banana | cytosol | 63.28 | 61.55 |
| CDX92473 | Canola | cytosol | 57.07 | 60.97 |
| CDY35815 | Canola | cytosol | 56.98 | 60.87 |
| CDY45096 | Canola | cytosol | 56.49 | 59.98 |
| VIT_11s0118g00200.t01 | Wine grape | cytosol | 60.17 | 59.03 |
| KRH20178 | Soybean | nucleus | 59.88 | 58.36 |
| KRH03629 | Soybean | endoplasmic reticulum | 59.88 | 58.36 |
| Bra009830.1-P | Field mustard | nucleus | 58.14 | 57.31 |
| PGSC0003DMT400071807 | Potato | cytosol | 58.53 | 57.31 |
| VIT_04s0008g05730.t01 | Wine grape | cytosol | 58.72 | 57.28 |
| CDX78411 | Canola | cytosol | 57.66 | 57.27 |
| Bra006090.1-P | Field mustard | cytosol | 57.56 | 57.17 |
| Solyc07g007790.2.1 | Tomato | cytosol | 58.33 | 57.12 |
| Bra002289.1-P | Field mustard | cytosol | 57.36 | 56.81 |
| AT5G11110.1 | Thale cress | cytosol | 57.46 | 56.64 |
| AT5G20280.1 | Thale cress | cytosol | 56.88 | 56.28 |
| HORVU3Hr1G002280.1 | Barley | plastid | 61.53 | 56.19 |
| Bra020096.1-P | Field mustard | cytosol | 56.01 | 56.12 |
| Solyc08g042000.2.1 | Tomato | nucleus | 56.01 | 55.31 |
| HORVU3Hr1G093830.2 | Barley | cytosol, nucleus | 42.93 | 44.61 |
| HORVU4Hr1G015570.3 | Barley | cytosol | 44.86 | 43.84 |
| PGSC0003DMT400076855 | Potato | cytosol, peroxisome, plastid | 21.61 | 42.72 |
| HORVU4Hr1G049500.3 | Barley | cytosol | 14.73 | 18.77 |
| HORVU7Hr1G033230.2 | Barley | mitochondrion | 14.53 | 18.54 |
| HORVU2Hr1G030870.1 | Barley | plasma membrane | 14.63 | 18.5 |
| HORVU7Hr1G007220.8 | Barley | cytosol | 14.34 | 18.16 |
| HORVU6Hr1G094880.6 | Barley | cytosol | 14.63 | 17.54 |
| HORVU7Hr1G120520.1 | Barley | cytosol | 14.05 | 16.8 |
| HORVU0Hr1G019020.1 | Barley | cytosol | 2.42 | 16.78 |
| HORVU5Hr1G050660.1 | Barley | cytosol | 0.58 | 15.0 |
Protein Annotations
| KEGG:00500+2.4.1.14 | MapMan:3.1.2.7 | Gene3D:3.40.50.2000 | UniProt:A0A287TQ09 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005975 | GO:GO:0005985 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016157 | GO:GO:0016740 | GO:GO:0016757 | GO:GO:0046524 | InterPro:Glyco_trans_1 | EnsemblPlantsGene:HORVU6Hr1G028330 |
| EnsemblPlants:HORVU6Hr1G028330.1 | PFAM:PF00534 | PFAM:PF00862 | PFAM:PF05116 | PANTHER:PTHR12526 | PANTHER:PTHR12526:SF347 |
| InterPro:SPP_N | InterPro:SPS_C | SUPFAM:SSF53756 | InterPro:Sucrose_synth | InterPro:SucrsPsyn_pln | TIGRFAMs:TIGR02468 |
| UniParc:UPI000B46CCB8 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:112360001..112367974
Molecular Weight (calculated)
115748.0 Da
IEP (calculated)
7.998
GRAVY (calculated)
-0.271
Length
1032 amino acids
Sequence
(BLAST)
(BLAST)
0001: YYQAAIFFLS LVLFCFGSNN KLHAFLFHFS SLPPPPPSLF WLTLHSSHPL PPISPARGGR CGCCSASKMV GNDNWINSYL DAILDAGKSA IGGDRPSLLL
0101: RERGHFSPAR YFVEEVITGY DETDLYKTWL RANAMRSPQE RNTRLENMTW RIWNLARKKK ELEKEEACRL LKRHPETEKT RIDATADMSE DLFEGEKGED
0201: AGDPSVAYGD STTGISPKTS SVDKLYIVLI SLHGLVRGEN MELGRDSDTG GQVKYVVEFA KALSSSPGVY RVDLLTRQIL APNFDRSYGE PAEMLVSTTF
0301: KNSKQEKGEN SGGYIIRIPF GPRDMYLTKE RLWPFIQEFV DGALSHIVRM SKTIGEEIGC GHPVWPAVIH GHYASAGIAA ALLSGALNLP MAFTGHFLGK
0401: DKLEGLLKQG RQSREEINMT YKIMRRIEAE ELSLDASEIV IASTRQEIEE QWNLYDGFEV ILARKLRARV KRGANCYGRY MPRMVIIPPG VEFGHIVHDF
0501: DIDGEEENHG PASEDPPIWS QIMRFFTNPR KPMILAVARP YPEKNITTLV KAFGECRPLR ELANLTLIMG NREAISKMHN TSASVLTSVL TLIDEYDLYG
0601: QVAYPKHHKH SEVPDIYRLA TRTKGAFVNV AYFEQFGVTL IEAAMNGLPV IATKNGAPVE IHQVLNNGLL VDPHDQNAIA DALYKLLSEK QLWSRCRENG
0701: LKNIHQFSWP EHCKNHLSRI LTLGMRSPAV GSKEERSKAP ISGRKHIIVI SVDSVNKEDL VRIIRNAIEA AHTENTPALT GFVLSTSLTI SEICSLLVSV
0801: GMHPAGFDAF ICNSGSSIYY PSYSGNTPSN SKVTHVIDRN HQSHIEYRWG GEGLRKYLVK WATSVVERKG RIERQMIFED SEHSSTYCLA FKVVNPNHLP
0901: PLKELRKLMR IQSLRCNALY NHSATRLSVT PIHASRSQAI RYLFVRWGIE LPNIVVIVGE SGDSDYEELL GGLHRTIILK GDFNIAANRI HTVRRYPLQD
1001: VVALDSSNII EVQGCTTEDI KSALRHIGVP TQ
0101: RERGHFSPAR YFVEEVITGY DETDLYKTWL RANAMRSPQE RNTRLENMTW RIWNLARKKK ELEKEEACRL LKRHPETEKT RIDATADMSE DLFEGEKGED
0201: AGDPSVAYGD STTGISPKTS SVDKLYIVLI SLHGLVRGEN MELGRDSDTG GQVKYVVEFA KALSSSPGVY RVDLLTRQIL APNFDRSYGE PAEMLVSTTF
0301: KNSKQEKGEN SGGYIIRIPF GPRDMYLTKE RLWPFIQEFV DGALSHIVRM SKTIGEEIGC GHPVWPAVIH GHYASAGIAA ALLSGALNLP MAFTGHFLGK
0401: DKLEGLLKQG RQSREEINMT YKIMRRIEAE ELSLDASEIV IASTRQEIEE QWNLYDGFEV ILARKLRARV KRGANCYGRY MPRMVIIPPG VEFGHIVHDF
0501: DIDGEEENHG PASEDPPIWS QIMRFFTNPR KPMILAVARP YPEKNITTLV KAFGECRPLR ELANLTLIMG NREAISKMHN TSASVLTSVL TLIDEYDLYG
0601: QVAYPKHHKH SEVPDIYRLA TRTKGAFVNV AYFEQFGVTL IEAAMNGLPV IATKNGAPVE IHQVLNNGLL VDPHDQNAIA DALYKLLSEK QLWSRCRENG
0701: LKNIHQFSWP EHCKNHLSRI LTLGMRSPAV GSKEERSKAP ISGRKHIIVI SVDSVNKEDL VRIIRNAIEA AHTENTPALT GFVLSTSLTI SEICSLLVSV
0801: GMHPAGFDAF ICNSGSSIYY PSYSGNTPSN SKVTHVIDRN HQSHIEYRWG GEGLRKYLVK WATSVVERKG RIERQMIFED SEHSSTYCLA FKVVNPNHLP
0901: PLKELRKLMR IQSLRCNALY NHSATRLSVT PIHASRSQAI RYLFVRWGIE LPNIVVIVGE SGDSDYEELL GGLHRTIILK GDFNIAANRI HTVRRYPLQD
1001: VVALDSSNII EVQGCTTEDI KSALRHIGVP TQ
0001: MARNDWINSY LEAILDVGTS KKKRFESNSK IVQKLGDINS KDHQEKVFGD MNGKDHQEKV FSPIKYFVEE VVNSFDESDL YKTWIKVIAT RNTRERSNRL
0101: ENICWRIWHL ARKKKQIVWD DGVRLSKRRI EREQGRNDAE EDLLSELSEG EKDKNDGEKE KSEVVTTLEP PRDHMPRIRS EMQIWSEDDK SSRNLYIVLI
0201: SMHGLVRGEN MELGRDSDTG GQVKYVVELA RALANTEGVH RVDLLTRQIS SPEVDYSYGE PVEMLSCPPE GSDSCGSYII RIPCGSRDKY IPKESLWPHI
0301: PEFVDGALNH IVSIARSLGE QVNGGKPIWP YVIHGHYADA GEVAAHLAGA LNVPMVLTGH SLGRNKFEQL LQQGRITRED IDRTYKIMRR IEAEEQSLDA
0401: AEMVVTSTRQ EIDAQWGLYD GFDIKLERKL RVRRRRGVSC LGRYMPRMVV IPPGMDFSYV LTQDSQEPDG DLKSLIGPDR NQIKKPVPPI WSEIMRFFSN
0501: PHKPTILALS RPDHKKNVTT LVKAFGECQP LRELANLVLI LGNRDDIEEM PNSSSVVLMN VLKLIDQYDL YGQVAYPKHH KQSEVPDIYR LAAKTKGVFI
0601: NPALVEPFGL TLIEAAAYGL PIVATRNGGP VDIVKALNNG LLVDPHDQQA ISDALLKLVA NKHLWAECRK NGLKNIHRFS WPEHCRNYLS HVEHCRNRHP
0701: TSSLDIMKVP EELTSDSLRD VDDISLRFST EGDFTLNGEL DAGTRQKKLV DAISQMNSMK GCSAAIYSPG RRQMLFVVAV DSYDDNGNIK ANLNEIIKNM
0801: IKAADLTSGK GKIGFVLASG SSLQEVVDIT QKNLINLEDF DAIVCNSGSE IYYPWRDMMV DADYETHVEY KWPGESIRSV ILRLICTEPA AEDDITEYAS
0901: SCSTRCYAIS VKQGVKTRRV DDLRQRLRMR GLRCNIVYTH AATRLNVIPL CASRIQALRY LSIRWGIDMS KTVFFLGEKG DTDYEDLLGG LHKTIILKGV
1001: VGSDSEKLLR SEENFKREDA VPQESPNISY VKENGGSQEI MSTLEAYGIK
0101: ENICWRIWHL ARKKKQIVWD DGVRLSKRRI EREQGRNDAE EDLLSELSEG EKDKNDGEKE KSEVVTTLEP PRDHMPRIRS EMQIWSEDDK SSRNLYIVLI
0201: SMHGLVRGEN MELGRDSDTG GQVKYVVELA RALANTEGVH RVDLLTRQIS SPEVDYSYGE PVEMLSCPPE GSDSCGSYII RIPCGSRDKY IPKESLWPHI
0301: PEFVDGALNH IVSIARSLGE QVNGGKPIWP YVIHGHYADA GEVAAHLAGA LNVPMVLTGH SLGRNKFEQL LQQGRITRED IDRTYKIMRR IEAEEQSLDA
0401: AEMVVTSTRQ EIDAQWGLYD GFDIKLERKL RVRRRRGVSC LGRYMPRMVV IPPGMDFSYV LTQDSQEPDG DLKSLIGPDR NQIKKPVPPI WSEIMRFFSN
0501: PHKPTILALS RPDHKKNVTT LVKAFGECQP LRELANLVLI LGNRDDIEEM PNSSSVVLMN VLKLIDQYDL YGQVAYPKHH KQSEVPDIYR LAAKTKGVFI
0601: NPALVEPFGL TLIEAAAYGL PIVATRNGGP VDIVKALNNG LLVDPHDQQA ISDALLKLVA NKHLWAECRK NGLKNIHRFS WPEHCRNYLS HVEHCRNRHP
0701: TSSLDIMKVP EELTSDSLRD VDDISLRFST EGDFTLNGEL DAGTRQKKLV DAISQMNSMK GCSAAIYSPG RRQMLFVVAV DSYDDNGNIK ANLNEIIKNM
0801: IKAADLTSGK GKIGFVLASG SSLQEVVDIT QKNLINLEDF DAIVCNSGSE IYYPWRDMMV DADYETHVEY KWPGESIRSV ILRLICTEPA AEDDITEYAS
0901: SCSTRCYAIS VKQGVKTRRV DDLRQRLRMR GLRCNIVYTH AATRLNVIPL CASRIQALRY LSIRWGIDMS KTVFFLGEKG DTDYEDLLGG LHKTIILKGV
1001: VGSDSEKLLR SEENFKREDA VPQESPNISY VKENGGSQEI MSTLEAYGIK
Arabidopsis Description
SPS4Probable sucrose-phosphate synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JLK2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.