Factsheet for VIT_04s0008g05730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0118g00200.t01	Wine grape	cytosol	77.79	78.23
CDX80498	Canola	cytosol	68.05	74.46
CDX88168	Canola	nucleus	67.3	74.17
CDX70382	Canola	cytosol	66.54	73.18
Bra009830.1-P	Field mustard	nucleus	72.02	72.78
GSMUA_Achr4P06050_001	Banana	cytosol	72.21	72.14
GSMUA_Achr9P22510_001	Banana	cytosol	72.12	71.91
Bra006090.1-P	Field mustard	cytosol	70.42	71.7
CDX78411	Canola	cytosol	70.32	71.61
AT5G11110.1	Thale cress	cytosol	70.79	71.54
Solyc08g042000.2.1	Tomato	nucleus	69.28	70.14
VIT_18s0075g00350.t01	Wine grape	cytosol	9.17	68.31
Os08t0301500-01	Rice	plasma membrane	68.05	67.54
Zm00001d050125_P002	Maize	nucleus	67.49	67.42
OQU78428	Sorghum	nucleus	67.67	66.92
TraesCS3D01G013000.1	Wheat	nucleus	67.39	66.7
TraesCS3A01G015500.1	Wheat	golgi	67.3	66.48
TraesCSU01G044500.2	Wheat	unclear	67.3	66.17
Zm00001d015570_P002	Maize	cytosol	57.56	63.17
TraesCS6A01G144800.1	Wheat	cytoskeleton, cytosol, nucleus	57.28	62.86
HORVU3Hr1G002280.1	Barley	plastid	67.11	62.83
KXG29640	Sorghum	cytosol	57.18	62.76
TraesCS7B01G434300.1	Wheat	cytosol	57.37	62.51
TraesCS7D01G508100.1	Wheat	cytosol	57.28	62.41
TraesCS7A01G518200.1	Wheat	cytosol	57.28	62.35
TraesCS6D01G133800.1	Wheat	cytosol	56.71	62.24
Zm00001d036749_P001	Maize	cytosol	56.52	61.33
KXG20466	Sorghum	cytosol	56.43	60.92
PGSC0003DMT400076855	Potato	cytosol, peroxisome, plastid	29.87	60.54
Os02t0184400-01	Rice	endoplasmic reticulum, golgi	57.37	60.04
HORVU6Hr1G028330.1	Barley	endoplasmic reticulum, golgi	57.28	58.72
TraesCS6B01G173000.2	Wheat	endoplasmic reticulum, plasma membrane	57.28	58.27
VIT_05s0029g01140.t01	Wine grape	cytosol	57.37	56.89
VIT_18s0089g00410.t01	Wine grape	cytosol	54.16	55.96
HORVU7Hr1G115590.10	Barley	nucleus	52.08	55.16
Zm00001d046595_P002	Maize	cytosol	50.38	54.5
Os06t0643800-01	Rice	plasma membrane	8.98	51.63
Zm00001d016399_P002	Maize	extracellular	6.62	44.59
VIT_18s0075g00340.t01	Wine grape	plastid	5.58	30.1
VIT_10s0071g00080.t01	Wine grape	cytosol	1.98	27.27
VIT_05s0077g01930.t01	Wine grape	cytosol	16.54	21.66
VIT_11s0016g00470.t01	Wine grape	cytosol	16.35	21.23
VIT_07s0005g00750.t01	Wine grape	cytosol	16.16	21.09
VIT_04s0079g00230.t01	Wine grape	cytosol	15.88	19.83
VIT_12s0057g00130.t01	Wine grape	cytosol	3.02	18.08
VIT_00s1562g00010.t01	Wine grape	cytosol	3.02	18.08
VIT_17s0053g00700.t01	Wine grape	cytosol	15.12	17.66
VIT_10s0071g00070.t01	Wine grape	cytosol	1.32	17.28

Protein Annotations

KEGG:00500+2.4.1.14	EntrezGene:100244135	wikigene:100244135	MapMan:3.1.2.7	Gene3D:3.40.50.2000	ProteinID:CCB46819
ProteinID:CCB46819.1	ncoils:Coil	UniProt:F6H3I4	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005975	GO:GO:0005985	GO:GO:0006810
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009987	GO:GO:0010208
GO:GO:0016020	GO:GO:0016043	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	GO:GO:0046524
GO:GO:0071836	InterPro:Glyco_trans_1	EntrezGene:LOC100244135	wikigene:LOC100244135	PFAM:PF00534	PFAM:PF00862
PFAM:PF05116	PANTHER:PTHR12526	PANTHER:PTHR12526:SF334	InterPro:SPP_N	InterPro:SPS_C	SUPFAM:SSF53756
InterPro:Sucrose_synth	InterPro:SucrsPsyn_pln	TIGRFAMs:TIGR02468	UniParc:UPI000198311C	ArrayExpress:VIT_04s0008g05730	EnsemblPlantsGene:VIT_04s0008g05730
EnsemblPlants:VIT_04s0008g05730.t01	RefSeq:XP_002282808	RefSeq:XP_002282808.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:5217664..5232786

Molecular Weight (calculated)

117908.0 Da

IEP (calculated)

6.577

GRAVY (calculated)

-0.394

Length

1058 amino acids

Sequence
(BLAST)

0001: MAGNDWLNSY LEAIIDAGPN LGDAKSSLLL RERGHFSPTR YFVEEVITGF DETDLHRSWA RASATRSPQE RNTRLENMCW RIWNLARKKK QLEGEEAQRV
0101: AKRHIDHERG RREATADMSE DLSEGEKGDT VSDLPAQADN FKGQMRRINS IDVMENWASQ HKEKKLYIVL ISLHGLIRGE NMELGRDSDT GGQVKYVVEL
0201: ARALGTMPGV YRVDLLTRQV SAPDVDWSYG EPAEMLHPVN SENPVQEIGE SSGAYIIRIP FGPKDKYISK ELLWPHIPEF VDGALVHIIQ MSKVLGEQIG
0301: NGQPVWPIAI HGHYADAGDS AALLSGAINV PMLFTGHSLG RDKLEQLLKQ GRQSNEEINA TYKITRRIEA EELTLDASEV VITSTRQEIE QQWSLYNGFD
0401: PVIERKLRAR IRRNVSCLGR FMPRMVIIPP GMEFHHIIPQ DGDMDGEIEG SGADPSSPDP PIWAEIMRFF TNPRKPMILA LARADPKKNI TTLVKAFGEC
0501: RSLRELANLT LIMGNRDDID EMSSTNASVL ISILKLIDKY DMYGQVAYPK HHKQSEVPEI YHLAAKTKGV FINPAFIEPF GLTLIEAAAH GLPIVATKNG
0601: GPVDIHRVLD NGLLVDPHDQ QSVANALLKL VADKHLWGRC RQNGLKNIHL FSWPEHCKTY LARIACCKQR HPEWQKPDDG FESSGSDSPG GSLRDIQDIS
0701: LNLKLSVGDE KNEVSRTLDN YLDSEENAVD GKSKLENAVS SWSKGVSVGT QKDGSIYKSE HHIGSSKSPA LRKRKYIFVI AVDGDGTTDF LESIKMVVET
0801: VRKDKYAGSV GFILSTSLAI SEMHSLLVSG GLSHSDFDAF ICNSGTELYY PSSTSEDGTP GLPFLLDSDY HSHIEYRWGG EDLRKTLLRW AASTTDEKGE
0901: GPIVSEDKSG STTHCYVFKV EKPELIPSIK ELRKSMRIQA LRCHVIYCQN GNKLNIIPVL ASRSQALRYL HVRWGIDLSH VVVFVGEHGD TDYEGLLGGL
1001: HKTVILKGVG CSVGKHHAHR YYPLEDVVPF DSPNITQTEG CNSNSIRASL GKLGVLKV

Best Arabidopsis Sequence Match ( AT5G20280.1 )
(BLAST)

0001: MAGNDWVNSY LEAILDVGQG LDDARSSPSL LLRERGRFTP SRYFVEEVIT GYDETDLHRS WVKAVATRSP QERNTRLENM CWRIWNLARQ KKQHEEKEAQ
0101: RLAKRRLERE KGRREATADM SEEFSEGEKG DIISDISTHG ESTKPRLPRI NSAESMELWA SQQKGNKLYL VLISLHGLIR GENMELGRDS DTGGQVKYVV
0201: ELARALGSMP GVYRVDLLTR QVSSPDVDYS YGEPTEMLTP RDSEDFSDEM GESSGAYIVR IPFGPKDKYI PKELLWPHIP EFVDGAMSHI MQMSNVLGEQ
0301: VGVGKPIWPS AIHGHYADAG DATALLSGAL NVPMLLTGHS LGRDKLEQLL RQGRLSKEEI NSTYKIMRRI EGEELSLDVS EMVITSTRQE IDEQWRLYDG
0401: FDPILERKLR ARIKRNVSCY GRFMPRMVKI PPGMEFNHIV PHGGDMEDTD GNEEHPTSPD PPIWAEIMRF FSNSRKPMIL ALARPDPKKN ITTLVKAFGE
0501: CRPLRELANL ALIMGNRDGI DEMSSTSSSV LLSVLKLIDK YDLYGQVAYP KHHKQSDVPD IYRLAAKSKG VFINPAIIEP FGLTLIEAAA HGLPMVATKN
0601: GGPVDIHRVL DNGLLVDPHD QQSISEALLK LVADKHLWAK CRQNGLKNIH QFSWPEHCKT YLSRITSFKP RHPQWQSDDG GDNSEPESPS DSLRDIQDIS
0701: LNLKFSFDGS GNDNYMNQEG SSMDRKSKIE AAVQNWSKGK DSRKMGSLER SEVNSGKFPA VRRRKFIVVI ALDFDGEEDT LEATKRILDA VEKERAEGSV
0801: GFILSTSLTI SEVQSFLVSG GLNPNDFDAF ICNSGSDLHY TSLNNEDGPF VVDFYYHSHI EYRWGGEGLR KTLIRWASSL NEKKADNDEQ IVTLAEHLST
0901: DYCYTFTVKK PAAVPPVREL RKLLRIQALR CHVVYSQNGT RINVIPVLAS RIQALRYLFV RWGIDMAKMA VFVGESGDTD YEGLLGGLHK SVVLKGVSCS
1001: ACLHANRSYP LTDVISFESN NVVHASPDSD VRDALKKLEL LKD

Arabidopsis Description

SPS1Sucrose-phosphate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.