Factsheet for VIT_04s0079g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17270	Soybean	cytosol	77.21	77.86
KRH72916	Soybean	cytosol	76.74	77.38
PGSC0003DMT400043117	Potato	cytosol	75.21	75.83
KRH30890	Soybean	cytosol	73.44	73.61
GSMUA_Achr9P21240_001	Banana	cytosol	72.14	72.39
Solyc02g081300.2.1	Tomato	cytosol, nucleus	75.44	72.29
CDY71780	Canola	cytosol, extracellular	30.22	71.91
TraesCS4A01G492600.1	Wheat	cytosol	47.11	71.25
Bra039502.1-P	Field mustard	cytosol	70.13	70.97
AT5G37180.1	Thale cress	cytosol	69.54	70.37
GSMUA_Achr3P13980_001	Banana	cytosol	70.01	70.26
CDY38565	Canola	cytosol	70.13	70.21
VIT_17s0053g00700.t01	Wine grape	cytosol	74.97	70.09
CDY26996	Canola	cytosol	69.54	69.62
TraesCS2A01G406700.1	Wheat	cytosol	69.54	68.17
Os04t0249500-00	Rice	cytosol	67.89	68.13
TraesCS2D01G403600.1	Wheat	cytosol	69.54	68.01
Os04t0309600-01	Rice	cytosol, plasma membrane	67.77	68.01
TraesCS2B01G424300.1	Wheat	cytosol	69.3	67.94
TraesCS7B01G482200.1	Wheat	cytosol	68.59	67.48
HORVU7Hr1G120520.1	Barley	cytosol	68.71	67.44
TraesCS7D01G552800.1	Wheat	cytosol	68.48	67.36
TraesCS7A01G557600.1	Wheat	cytosol	68.24	67.13
Os02t0831500-01	Rice	plastid	66.59	66.67
VIT_12s0057g00130.t01	Wine grape	cytosol	13.81	66.1
VIT_00s1562g00010.t01	Wine grape	cytosol	13.81	66.1
OQU77175	Sorghum	plastid	69.78	65.89
VIT_10s0071g00070.t01	Wine grape	cytosol	6.26	65.43
HORVU6Hr1G094880.6	Barley	cytosol	66.35	65.27
TraesCSU01G082000.1	Wheat	plastid	66.71	65.09
TraesCS6D01G403800.1	Wheat	cytosol	66.47	64.94
TraesCS6B01G466600.1	Wheat	cytosol	66.47	64.86
CDX72985	Canola	cytosol	69.42	62.95
CDX96472	Canola	cytosol	69.42	62.89
Bra015995.1-P	Field mustard	cytosol	70.01	62.88
Bra003845.1-P	Field mustard	cytosol	69.78	62.87
CDX68228	Canola	cytosol	69.42	62.55
CDY11107	Canola	cytosol	69.42	62.55
AT1G73370.1	Thale cress	cytosol	69.42	62.42
Zm00001d050151_P001	Maize	cytosol	10.04	62.04
Zm00001d051837_P002	Maize	cytosol	61.63	61.34
Zm00001d014119_P001	Maize	cytosol	10.98	60.78
KXG31429	Sorghum	cytosol	61.87	60.72
VIT_10s0071g00080.t01	Wine grape	cytosol	5.31	58.44
VIT_07s0005g00750.t01	Wine grape	cytosol	53.6	55.98
VIT_05s0077g01930.t01	Wine grape	cytosol	53.01	55.57
VIT_11s0016g00470.t01	Wine grape	cytosol	52.77	54.85
VIT_18s0075g00350.t01	Wine grape	cytosol	5.55	33.1
VIT_11s0118g00200.t01	Wine grape	cytosol	20.43	16.44
VIT_05s0029g01140.t01	Wine grape	cytosol	20.54	16.31
VIT_04s0008g05730.t01	Wine grape	cytosol	19.83	15.88
VIT_18s0089g00410.t01	Wine grape	cytosol	19.13	15.82
VIT_18s0075g00340.t01	Wine grape	plastid	0.24	1.02

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	EntrezGene:100266759	wikigene:100266759	MapMan:3.1.4.2	Gene3D:3.10.450.330
Gene3D:3.40.50.2000	ProteinID:CCB51106	ProteinID:CCB51106.1	ncoils:Coil	UniProt:F6HFV4	EMBL:FN595753
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975
GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740
GO:GO:0016757	GO:GO:0030312	GO:GO:0080165	InterPro:Glyco_trans_1	EntrezGene:LOC100266759	wikigene:LOC100266759
PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF379	SUPFAM:SSF53756	InterPro:Sucrose_synth
InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI000210879C	ArrayExpress:VIT_04s0079g00230	EnsemblPlantsGene:VIT_04s0079g00230	EnsemblPlants:VIT_04s0079g00230.t01
RefSeq:XP_002267020	RefSeq:XP_002267020.2	SEG:seg	:	:	:

Description

Sucrose synthase [Source:UniProtKB/TrEMBL;Acc:F6HFV4]

Coordinates

chr4:+:10519230..10523422

Molecular Weight (calculated)

96132.6 Da

IEP (calculated)

8.234

GRAVY (calculated)

-0.324

Length

847 amino acids

Sequence
(BLAST)

001: MASKPTLKRA DSMAENMPDA LRQSRYHMKR CFARYIGKGK RLMKLNHLMD EMEAVIDDKN ERTQVLEGVL GFILCSTQEA VAIPPHVIFS IRSNPGFWEY
101: VKVSSDDLSV EAITAADYLK FKEMVFDENW AKDDNALELN FSAFDFPMPR LTLSSSIGNG VSLVSKFMTS KLNGNSQSAQ PLVDYLLSLN HQGEKLMITN
201: TLNTPTKLQM ALIVAEVFVS ALPKDTPYPS FELRFKEWGF EKGWGNTAER VKETMRSLSE ALEAPDPMNM EKFLSRLPTI FNVVIFSPHG YFGQSDVLGL
301: PDTGGQVVYI LDQVRALEEE LLLRIKLQGL NVKPQILVVT RLIPDARGTK CNQEWEPIDN TKHSTILRIP FRTEKGILNQ WVSRFDIYPY LERFTQASII
401: TSMDATAKII EHMEGKPDLI IGNYTDGNLV ASLMATKLGI TQGTIAHALE KTKYEDSDVK WKELEPKYHF SCQFTADTIS MNAADFIITS TYQEIAGSKD
501: RPGQYESHTS FTLPGLCRVV SGINLFDPKF NIAAPGADQS VYFPYMERHK RLTSFQPAIE ELLYSKQDNN EHIGFLADRK KPIIFSMARL DIVKNITGLT
601: EWFGNNKRLR SLVNLVIVAG FFDPSKSKDR EEMAEIKKMH TLIEKYQLKG QIRWIAAQND RRRNGELYRC IADTKGAFVQ PAIYEAFGLT VIEAMNCGLP
701: TFATNQGGPA EIIVDGVSGF HIDPNIGDES SNKIADFFEK CRDDSDHWNK ISKAGLQRIN ECYTWKIYAN KVLNMGCVFS FWRQLNTEHK QAKQKYIHMF
801: YTLQFRNLVK NIPIPASEVQ PPVSRAITKV PPTQSTTTRR SQSRLGR

Best Arabidopsis Sequence Match ( AT1G73370.1 )
(BLAST)

001: MSSSSQAMLQ KSDSIAEKMP DALKQSRYHM KRCFASFVGG GKKLMKREHL MNEIEKCIED SRERSKILEG LFGYILTCTQ EAAVVPPFVA LAARPNPGFW
101: EYVKVNSGDL TVDEITATDY LKLKESVFDE SWSKDENALE IDFGAIDFTS PRLSLSSSIG KGADYISKFI SSKLGGKSDK LEPLLNYLLR LNHHGENLMI
201: NDDLNTVAKL QKSLMLAVIV VSTYSKHTPY ETFAQRLKEM GFEKGWGDTA ERVKETMIIL SEVLEAPDNG KLDLLFSRLP TVFNVVIFSV HGYFGQQDVL
301: GLPDTGGQVV YILDQVRALE EELLIRINQQ GLGFKPQILV VTRLIPEARG TKCDQELEAI EGTKHSHILR VPFVTNKGVL RQWVSRFDIY PYLERFTQDA
401: TSKILQRLDC KPDLIIGNYT DGNLVASLMA TKLGVTQGTI AHALEKTKYE DSDAKWKELD PKYHFSCQFT ADLIAMNVTD FIITSTYQEI AGSKDRPGQY
501: ESHTAFTMPG LCRVVSGIDV FDPKFNIAAP GADQSVYFPY TEKDKRFTKF HPSIQELLYN EKDNAEHMGY LADREKPIIF SMARLDTVKN ITGLVEWYGK
601: DKRLREMANL VVVAGFFDMS KSNDREEKAE IKKMHDLIEK YKLKGKFRWI AAQTDRYRNS ELYRCIADTK GVFVQPALYE AFGLTVIEAM NCGLPTFATN
701: QGGPAEIIVD GVSGFHIDPN NGDESVTKIG DFFSKCRSDG LYWDNISKGG LKRIYECYTW KIYAEKLLKM GSLYGFWRQV NEDQKKAKKR YIEMLYNLQF
801: KQLTKKVTIP EDKPLPLRLA SLRNLLPKKT TNLGAGSKQK EVTETEKTKQ KSKDGQEQHD VKVGEREVRE GLLAADASER VKKVLESSEE KQKLEKMKIA
901: YGQQHSQGAS PVRNLFWSVV VCLYICYILK QRFFGANSAQ EY

Arabidopsis Description

SUS6Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3K7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.