Factsheet for VIT_11s0118g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g01230.t01
VIT_10s0116g00030.t01
VIT_10s0116g00090.t01
VIT_10s0597g00040.t01
VIT_18s0001g04140.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20280.1	VIT_07s0005g01230.t01	AT1G02680.1	21798944
AT5G20280.1	VIT_10s0116g00030.t01	AT1G61870.1	21798944
AT5G20280.1	VIT_10s0116g00090.t01	AT1G61870.1	21798944
AT5G20280.1	VIT_10s0597g00040.t01	AT4G21705.1	21798944
AT5G20280.1	VIT_18s0001g04140.t01	AT5G09320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20178	Soybean	nucleus	83.08	82.53
KRH03629	Soybean	endoplasmic reticulum	82.7	82.15
Solyc07g007790.2.1	Tomato	cytosol	80.7	80.55
PGSC0003DMT400071807	Potato	cytosol	80.61	80.46
CDX92473	Canola	cytosol	72.62	79.09
CDY35815	Canola	cytosol	72.34	78.78
AT5G20280.1	Thale cress	cytosol	77.19	77.85
Bra002289.1-P	Field mustard	cytosol	77.09	77.83
VIT_04s0008g05730.t01	Wine grape	cytosol	78.23	77.79
CDY45096	Canola	cytosol	71.48	77.37
Bra020096.1-P	Field mustard	cytosol	74.43	76.02
GSMUA_Achr4P06050_001	Banana	cytosol	74.52	74.03
GSMUA_Achr9P22510_001	Banana	cytosol	74.24	73.61
Os08t0301500-01	Rice	plasma membrane	71.2	70.26
VIT_18s0075g00350.t01	Wine grape	cytosol	9.41	69.72
OQU78428	Sorghum	nucleus	69.87	68.69
Zm00001d050125_P002	Maize	nucleus	69.11	68.65
TraesCS3D01G013000.1	Wheat	nucleus	69.49	68.38
TraesCS3A01G015500.1	Wheat	golgi	69.3	68.07
TraesCSU01G044500.2	Wheat	unclear	69.3	67.75
HORVU3Hr1G002280.1	Barley	plastid	69.01	64.25
TraesCS6A01G144800.1	Wheat	cytoskeleton, cytosol, nucleus	58.75	64.11
Zm00001d015570_P002	Maize	cytosol	58.46	63.8
TraesCS6D01G133800.1	Wheat	cytosol	58.17	63.49
TraesCS7A01G518200.1	Wheat	cytosol	58.65	63.48
TraesCS7B01G434300.1	Wheat	cytosol	58.56	63.44
TraesCS7D01G508100.1	Wheat	cytosol	58.56	63.44
KXG29640	Sorghum	cytosol	57.98	63.28
Zm00001d036749_P001	Maize	cytosol	57.89	62.46
KXG20466	Sorghum	cytosol	57.79	62.04
Os02t0184400-01	Rice	endoplasmic reticulum, golgi	58.84	61.23
HORVU6Hr1G028330.1	Barley	endoplasmic reticulum, golgi	59.03	60.17
TraesCS6B01G173000.2	Wheat	endoplasmic reticulum, plasma membrane	58.84	59.52
VIT_05s0029g01140.t01	Wine grape	cytosol	58.37	57.54
HORVU7Hr1G115590.10	Barley	nucleus	53.8	56.66
Zm00001d046595_P002	Maize	cytosol	52.28	56.24
VIT_18s0089g00410.t01	Wine grape	cytosol	54.09	55.57
Os06t0643800-01	Rice	plasma membrane	9.13	52.17
Zm00001d016399_P002	Maize	extracellular	6.75	45.22
VIT_18s0075g00340.t01	Wine grape	plastid	5.13	27.55
VIT_10s0071g00080.t01	Wine grape	cytosol	1.9	25.97
VIT_07s0005g00750.t01	Wine grape	cytosol	16.73	21.7
VIT_05s0077g01930.t01	Wine grape	cytosol	16.54	21.53
VIT_11s0016g00470.t01	Wine grape	cytosol	16.35	21.1
VIT_04s0079g00230.t01	Wine grape	cytosol	16.44	20.43
VIT_00s1562g00010.t01	Wine grape	cytosol	3.33	19.77
VIT_12s0057g00130.t01	Wine grape	cytosol	3.33	19.77
VIT_10s0071g00070.t01	Wine grape	cytosol	1.52	19.75
VIT_17s0053g00700.t01	Wine grape	cytosol	16.35	18.98

Protein Annotations

KEGG:00500+2.4.1.14	EntrezGene:100241955	wikigene:100241955	MapMan:3.1.2.7	Gene3D:3.40.50.2000	ProteinID:CCB49908
ProteinID:CCB49908.1	UniProt:F6HCG2	EMBL:FN595515	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0005975
GO:GO:0005985	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987
GO:GO:0016020	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	GO:GO:0046524	GO:GO:0071836
InterPro:Glyco_trans_1	EntrezGene:LOC100241955	wikigene:LOC100241955	PFAM:PF00534	PFAM:PF00862	PFAM:PF05116
PANTHER:PTHR12526	PANTHER:PTHR12526:SF334	InterPro:SPP_N	InterPro:SPS_C	SUPFAM:SSF53756	InterPro:Sucrose_synth
InterPro:SucrsPsyn_pln	TIGR:TC57783	TIGR:TC60606	TIGRFAMs:TIGR02468	UniParc:UPI00015CC7DF	ArrayExpress:VIT_11s0118g00200
EnsemblPlantsGene:VIT_11s0118g00200	EnsemblPlants:VIT_11s0118g00200.t01	unigene:Vvi.6743	RefSeq:XP_002265473	RefSeq:XP_002265473.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:5766070..5776302

Molecular Weight (calculated)

118137.0 Da

IEP (calculated)

6.312

GRAVY (calculated)

-0.401

Length

1052 amino acids

Sequence
(BLAST)

0001: MAGNDWINSY LEAILDVGPG LDDAKTSLLL RERGRFSPTR YFVEQVITGF DETDLHRSWV RAAATRSPQE RNTRLENMCW RIWNLARQKK QLEGEEAQRI
0101: AKRRLERDRG RREAIADMSE DLSEGEKGDT VSDISAHGDS IRGRMPRISS VDAMETWVSY QKGKKLYIVL ISLHGLIRGE NMELGRDSDT GGQVKYVVEL
0201: ARALGSMPGV YRVDLLTRQV SSPEVDWSYG EPTEMLTPLN SESFMEDMGE SSGSYIIRIP FGPKDKYVEK ELLWPYIPEF VDGALNHIIQ MSKVLGEQIG
0301: DGQPVWPVAI HGHYADAGDS AALLSGALNV PMLFTGHSLG RDKLEQLLKQ GRISRDEINT TYKIMRRIEA EELALDASEI VITSTRQEIE QQWRLYDGFD
0401: PILERKLRAR IRRNVSCYGR FMPRMVIIPP GMEFHHIVPH DGDMDGETEG NEDHPRTPDP VIWSEIMRFF TNPRKPMILA LARPDPKKNI TTLVKAFGEC
0501: RPLRELANLT LIMGNRDGID EMSSTSASVL LSILKLIDKY DLYGQVAYPK HHKQSDVPDI YRLAAKTKGV FINPAFIEPF GLTLIEAAAY GLPIVATRNG
0601: GPVDIHRVLD NGLLVDPHDQ QSIADALLKL VADKQLWAKC RQNGLKNIHL FSWPEHCKTY LTKIASCKPR HPQWQRTDDG TENSDTDSPG DSLRDIQDIS
0701: LNLKFSLDGH KNEASGNPEN SDENAVDGKS KLENAVLTWS KGFVRDTRKA GFTEKSDQNT GTGKFPALRR RKHIFVIAVD CDTNTDTLET AGKILEAFGK
0801: EKTEGSVGFI LSTSMSISEV HSFLVSGGLS PSDFDAFVCN SGSDLYYSSL TSEDSPFVLD LYYHSHIEYR WGGEGLRKSL VRWTASINDK MADNERIVVE
0901: NEQVLTEYCY AFKVQKPGMV PPVKELRKLM RIHALRCHVI YCQNGTKLNV IPIMASRSQA LRYLYVRWGV DLSNIVVFVG ESGDTDYEGL LGGVHKTVIL
1001: KGVCASNQLH ANRTYPLTDV VPFDSPNIVQ MTEDCSGSDI RSSLEKVGVL KG

Best Arabidopsis Sequence Match ( AT5G20280.1 )
(BLAST)

0001: MAGNDWVNSY LEAILDVGQG LDDARSSPSL LLRERGRFTP SRYFVEEVIT GYDETDLHRS WVKAVATRSP QERNTRLENM CWRIWNLARQ KKQHEEKEAQ
0101: RLAKRRLERE KGRREATADM SEEFSEGEKG DIISDISTHG ESTKPRLPRI NSAESMELWA SQQKGNKLYL VLISLHGLIR GENMELGRDS DTGGQVKYVV
0201: ELARALGSMP GVYRVDLLTR QVSSPDVDYS YGEPTEMLTP RDSEDFSDEM GESSGAYIVR IPFGPKDKYI PKELLWPHIP EFVDGAMSHI MQMSNVLGEQ
0301: VGVGKPIWPS AIHGHYADAG DATALLSGAL NVPMLLTGHS LGRDKLEQLL RQGRLSKEEI NSTYKIMRRI EGEELSLDVS EMVITSTRQE IDEQWRLYDG
0401: FDPILERKLR ARIKRNVSCY GRFMPRMVKI PPGMEFNHIV PHGGDMEDTD GNEEHPTSPD PPIWAEIMRF FSNSRKPMIL ALARPDPKKN ITTLVKAFGE
0501: CRPLRELANL ALIMGNRDGI DEMSSTSSSV LLSVLKLIDK YDLYGQVAYP KHHKQSDVPD IYRLAAKSKG VFINPAIIEP FGLTLIEAAA HGLPMVATKN
0601: GGPVDIHRVL DNGLLVDPHD QQSISEALLK LVADKHLWAK CRQNGLKNIH QFSWPEHCKT YLSRITSFKP RHPQWQSDDG GDNSEPESPS DSLRDIQDIS
0701: LNLKFSFDGS GNDNYMNQEG SSMDRKSKIE AAVQNWSKGK DSRKMGSLER SEVNSGKFPA VRRRKFIVVI ALDFDGEEDT LEATKRILDA VEKERAEGSV
0801: GFILSTSLTI SEVQSFLVSG GLNPNDFDAF ICNSGSDLHY TSLNNEDGPF VVDFYYHSHI EYRWGGEGLR KTLIRWASSL NEKKADNDEQ IVTLAEHLST
0901: DYCYTFTVKK PAAVPPVREL RKLLRIQALR CHVVYSQNGT RINVIPVLAS RIQALRYLFV RWGIDMAKMA VFVGESGDTD YEGLLGGLHK SVVLKGVSCS
1001: ACLHANRSYP LTDVISFESN NVVHASPDSD VRDALKKLEL LKD

Arabidopsis Description

SPS1Sucrose-phosphate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.