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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69912
CDX89953
CDX94049
CDX98698
CDY07260
CDY15256
CDY15437
CDY21574
CDY25328
CDY47165
CDY71056

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G20280.1 CDX89953 AT1G02680.1 21798944
AT5G20280.1 CDY15256 AT1G02680.1 21798944
AT5G20280.1 CDY15437 AT1G02680.1 21798944
AT5G20280.1 CDY71056 AT1G02680.1 21798944
AT5G20280.1 CDY07260 AT1G61870.1 21798944
AT5G20280.1 CDY25328 AT1G61870.1 21798944
AT5G20280.1 CDY47165 AT1G61870.1 21798944
AT5G20280.1 CDX94049 AT4G21705.1 21798944
AT5G20280.1 CDX98698 AT4G21705.1 21798944
AT5G20280.1 CDX69912 AT5G09320.1 21798944
AT5G20280.1 CDY21574 AT5G09320.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92473 Canola cytosol 99.38 99.38
CDY45096 Canola cytosol 93.58 93.0
Bra002289.1-P Field mustard cytosol 99.38 92.13
AT5G20280.1 Thale cress cytosol 94.82 87.82
KRH20178 Soybean nucleus 79.5 72.52
VIT_11s0118g00200.t01 Wine grape cytosol 78.78 72.34
KRH03629 Soybean endoplasmic reticulum 79.19 72.24
PGSC0003DMT400071807 Potato cytosol 77.33 70.87
Solyc07g007790.2.1 Tomato cytosol 77.02 70.59
CDX80498 Canola cytosol 70.6 70.53
CDX88168 Canola nucleus 70.08 70.52
CDX70382 Canola cytosol 70.19 70.48
GSMUA_Achr4P06050_001 Banana cytosol 73.19 66.76
GSMUA_Achr9P22510_001 Banana cytosol 72.15 65.69
CDX78411 Canola cytosol 70.5 65.54
Os08t0301500-01 Rice plasma membrane 70.19 63.6
TraesCS3D01G013000.1 Wheat nucleus 69.25 62.58
OQU78428 Sorghum nucleus 69.15 62.43
TraesCS3A01G015500.1 Wheat golgi 68.94 62.18
TraesCSU01G044500.2 Wheat unclear 69.25 62.17
Zm00001d050125_P002 Maize nucleus 67.6 61.66
Zm00001d015570_P002 Maize cytosol 60.97 61.1
TraesCS6A01G144800.1 Wheat cytoskeleton, cytosol, nucleus 60.46 60.58
TraesCS7A01G518200.1 Wheat cytosol 60.87 60.49
KXG29640 Sorghum cytosol 60.35 60.48
TraesCS7D01G508100.1 Wheat cytosol 60.77 60.45
TraesCS7B01G434300.1 Wheat cytosol 60.77 60.45
Zm00001d036749_P001 Maize cytosol 60.56 60.0
TraesCS6D01G133800.1 Wheat cytosol 59.83 59.96
KXG20466 Sorghum cytosol 60.46 59.59
HORVU3Hr1G002280.1 Barley plastid 69.15 59.12
Os02t0184400-01 Rice endoplasmic reticulum, golgi 60.66 57.96
CDX73329 Canola cytosol 4.55 57.89
CDX94270 Canola nucleus 28.26 57.72
HORVU6Hr1G028330.1 Barley endoplasmic reticulum, golgi 60.87 56.98
TraesCS6B01G173000.2 Wheat endoplasmic reticulum, plasma membrane 60.56 56.25
HORVU7Hr1G115590.10 Barley nucleus 55.69 53.85
CDX89776 Canola cytosol 59.01 53.57
Zm00001d046595_P002 Maize cytosol 54.14 53.48
CDY18270 Canola cytosol 58.9 53.43
CDY41124 Canola cytosol 56.52 52.15
Os06t0643800-01 Rice plasma membrane 9.32 48.91
Zm00001d016399_P002 Maize extracellular 7.04 43.31
CDY69825 Canola cytosol 7.04 39.08
CDX87785 Canola cytosol 3.62 21.74
CDY52781 Canola mitochondrion 17.91 21.33
CDY22042 Canola cytosol, mitochondrion 17.81 21.21
CDX86250 Canola cytosol 17.18 21.07
CDX88838 Canola endoplasmic reticulum, golgi 15.94 20.73
CDX85398 Canola cytosol 17.18 20.57
CDX92432 Canola cytosol 16.25 19.5
CDY16569 Canola cytosol 16.25 19.5
CDX70945 Canola cytosol 16.25 19.48
CDY38565 Canola cytosol 15.63 17.85
CDY26996 Canola cytosol 15.53 17.73
CDY11107 Canola cytosol 16.98 17.45
CDX68228 Canola cytosol 16.98 17.45
CDX72985 Canola cytosol 16.77 17.34
CDX96472 Canola cytosol 16.77 17.33
CDY46981 Canola cytosol, nucleus, plastid 5.8 16.33
CDY71780 Canola cytosol, extracellular 4.97 13.48
Protein Annotations
KEGG:00500+2.4.1.14MapMan:3.1.2.7Gene3D:3.40.50.2000GO:A0A078HBM9UniProt:A0A078HBM9EnsemblPlants:CDY35815
ProteinID:CDY35815ProteinID:CDY35815.1ncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0005975
GO:GO:0005985GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016157GO:GO:0016740
GO:GO:0016757GO:GO:0046524EnsemblPlantsGene:GSBRNA2T00059319001InterPro:Glyco_trans_1PFAM:PF00534PFAM:PF00862
PFAM:PF05116PANTHER:PTHR12526PANTHER:PTHR12526:SF334MetaCyc:PWY-7238MetaCyc:PWY-7347InterPro:SPP_N
InterPro:SPS_CSUPFAM:SSF53756InterPro:Sucrose_synthInterPro:SucrsPsyn_plnTIGRFAMs:TIGR02468UniPathway:UPA00371
UniParc:UPI0004EE6BC2SEG:seg::::
Description
BnaC09g37470DBnaC09g37470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBM9]
Coordinates
chrLK032362:+:53479..58862
Molecular Weight (calculated)
109247.0 Da
IEP (calculated)
6.802
GRAVY (calculated)
-0.419
Length
966 amino acids
Sequence
(BLAST)
001: MAGNDWVNSY LEAILDVGQP LDDARPSLLL RERGRFTPSR YFVEEVITGY DETDLHRSWV KAVATRSPQE RNTRLENMCW RIWNLARQKK QHEEKEAQRL
101: AKRRLERERG RREATADMSE EFSEGEKVDL LSDVSTHGTK SRLPRINSAE SMEIWANQQK GNKLYLVLIS LHGLIRGENM ELGRDSDTGG QVKYVVELAR
201: ALGSMPGVYR VDLLTRQVSS PDVDWSYGEP TEMLTPRDSE DYSDEMGESS GAYIVRIPFG PKDKYIPKEL LWPHIAEFVD GAMNHIMQMS SVLGEQVRGG
301: KPIWPSAIHG HYADAGDAAA LLSGALNVPM ILTGHSLGRD KLEQLLKQGR LSKEEINSTY KIMRRIEGEE LSLDVSEMVI TSTRQEIDEQ WRLYDGFDPI
401: LERKLRARIK RNVSCYGRFM PRMVKIPPGM EFNHIVPHDG DMEDPDGNEE HPTSRDPPIW AEIMRFFSNS RKPMILALAR PDPKKNITTL VKAFGECRPL
501: RDLANLALIM GNRDGIDEMS STSSSVLLSV LKLIDKYDLY GQVAYPKHHK QSDVPDIYRL AAKSKGVFIN PAFIEPFGLT LIEAAAHGLP MVATKNGGPV
601: DIHRVLDNGL LVDPHDQQSI SEALLKLVAD KQLWAKCRQN GLKNIHQFSW PEHCKTYLSR ITSFKPRHPQ WQKVNSGKFP AVRRRKFIVV IALDFDGERD
701: TLEATRRIQE AVEKERAEGT VGFILSTSLT ISEIQSFLVS GGLNPNDFDA FVCNSGSDLY YTSVNSEDGP FVVDFYYHSH VEYRWGGEGL RKTLIRWASS
801: VNEKKSENDE QIVTLAEHLS TDYCYTFAVK KPAAVPPVRE LRKLLRIQAL RCHVVYSQNG TRINVIPVLA SRIQALRYLF VRWGIDMAKM VVFVGESGDT
901: DYEGLLGGLH KSVVLEGVSC SASNALHANR SYPLTDVISL ESNNVVHARV DSDVRDALKK LELLED
Best Arabidopsis Sequence Match ( AT5G20280.1 )
(BLAST)
0001: MAGNDWVNSY LEAILDVGQG LDDARSSPSL LLRERGRFTP SRYFVEEVIT GYDETDLHRS WVKAVATRSP QERNTRLENM CWRIWNLARQ KKQHEEKEAQ
0101: RLAKRRLERE KGRREATADM SEEFSEGEKG DIISDISTHG ESTKPRLPRI NSAESMELWA SQQKGNKLYL VLISLHGLIR GENMELGRDS DTGGQVKYVV
0201: ELARALGSMP GVYRVDLLTR QVSSPDVDYS YGEPTEMLTP RDSEDFSDEM GESSGAYIVR IPFGPKDKYI PKELLWPHIP EFVDGAMSHI MQMSNVLGEQ
0301: VGVGKPIWPS AIHGHYADAG DATALLSGAL NVPMLLTGHS LGRDKLEQLL RQGRLSKEEI NSTYKIMRRI EGEELSLDVS EMVITSTRQE IDEQWRLYDG
0401: FDPILERKLR ARIKRNVSCY GRFMPRMVKI PPGMEFNHIV PHGGDMEDTD GNEEHPTSPD PPIWAEIMRF FSNSRKPMIL ALARPDPKKN ITTLVKAFGE
0501: CRPLRELANL ALIMGNRDGI DEMSSTSSSV LLSVLKLIDK YDLYGQVAYP KHHKQSDVPD IYRLAAKSKG VFINPAIIEP FGLTLIEAAA HGLPMVATKN
0601: GGPVDIHRVL DNGLLVDPHD QQSISEALLK LVADKHLWAK CRQNGLKNIH QFSWPEHCKT YLSRITSFKP RHPQWQSDDG GDNSEPESPS DSLRDIQDIS
0701: LNLKFSFDGS GNDNYMNQEG SSMDRKSKIE AAVQNWSKGK DSRKMGSLER SEVNSGKFPA VRRRKFIVVI ALDFDGEEDT LEATKRILDA VEKERAEGSV
0801: GFILSTSLTI SEVQSFLVSG GLNPNDFDAF ICNSGSDLHY TSLNNEDGPF VVDFYYHSHI EYRWGGEGLR KTLIRWASSL NEKKADNDEQ IVTLAEHLST
0901: DYCYTFTVKK PAAVPPVREL RKLLRIQALR CHVVYSQNGT RINVIPVLAS RIQALRYLFV RWGIDMAKMA VFVGESGDTD YEGLLGGLHK SVVLKGVSCS
1001: ACLHANRSYP LTDVISFESN NVVHASPDSD VRDALKKLEL LKD
Arabidopsis Description
SPS1Sucrose-phosphate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BT0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.