CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22042
CDY52781

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	CDY22042	AT4G02280.1	21798944
AT4G02280.1	CDY52781	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22042	Canola	cytosol, mitochondrion	98.52	98.52
AT4G02280.1	Thale cress	mitochondrion	93.59	93.82
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	81.63	81.53
VIT_07s0005g00750.t01	Wine grape	cytosol	81.38	81.38
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	81.26	81.16
GSMUA_Achr8P22470_001	Banana	cytosol	79.65	79.85
EER92301	Sorghum	cytosol	78.79	78.99
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	78.67	78.86
TraesCS4D01G169800.1	Wheat	cytosol	78.3	78.49
HORVU4Hr1G049500.3	Barley	cytosol	77.81	77.9
GSMUA_Achr3P08200_001	Banana	mitochondrion	17.39	77.9
TraesCS4A01G140000.1	Wheat	cytosol, golgi, unclear	77.68	77.87
Solyc09g098590.2.1	Tomato	cytosol	77.93	77.83
PGSC0003DMT400017087	Potato	cytosol	77.81	77.81
Zm00001d029091_P003	Maize	cytosol	79.04	77.79
TraesCS4B01G167500.1	Wheat	cytosol	77.31	77.5
GSMUA_Achr3P08190_001	Banana	cytosol	59.19	76.92
Zm00001d029087_P002	Maize	cytosol	78.91	75.38
CDX86250	Canola	cytosol	72.63	74.75
CDX85398	Canola	cytosol	74.11	74.47
CDX88838	Canola	endoplasmic reticulum, golgi	63.75	69.58
CDX70945	Canola	cytosol	67.2	67.62
CDY16569	Canola	cytosol	67.08	67.58
CDX92432	Canola	cytosol	66.83	67.33
Zm00001d010801_P001	Maize	cytosol	19.61	64.9
CDY26996	Canola	cytosol	55.24	52.96
CDY38565	Canola	cytosol	55.24	52.96
CDY71780	Canola	cytosol, extracellular	23.18	52.81
CDX87785	Canola	cytosol	10.11	50.93
CDX72985	Canola	cytosol	55.86	48.5
CDX96472	Canola	cytosol	55.73	48.34
CDY11107	Canola	cytosol	55.98	48.3
CDX68228	Canola	cytosol	55.86	48.19
CDY46981	Canola	cytosol, nucleus, plastid	15.29	36.15
CDX73329	Canola	cytosol	2.47	26.32
CDX94270	Canola	nucleus	10.85	18.6
CDY35815	Canola	cytosol	21.33	17.91
CDX92473	Canola	cytosol	21.21	17.81
CDY45096	Canola	cytosol	20.59	17.18
CDX88168	Canola	nucleus	20.22	17.08
CDX70382	Canola	cytosol	20.22	17.05
CDX80498	Canola	cytosol	20.22	16.96
CDX78411	Canola	cytosol	20.72	16.17
CDX89776	Canola	cytosol	21.09	16.07
CDY18270	Canola	cytosol	21.09	16.06
CDY41124	Canola	cytosol	19.11	14.8
CDY69825	Canola	cytosol	0.74	3.45

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	GO:A0A078ISF2
UniProt:A0A078ISF2	EnsemblPlants:CDY52781	ProteinID:CDY52781	ProteinID:CDY52781.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157
GO:GO:0016740	GO:GO:0016757	EnsemblPlantsGene:GSBRNA2T00007838001	InterPro:Glyco_trans_1	PFAM:PF00534	PFAM:PF00862
PANTHER:PTHR12526	PANTHER:PTHR12526:SF509	MetaCyc:PWY-3801	SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn
TIGRFAMs:TIGR02470	UniParc:UPI0004EF1238	SEG:seg	:	:	:

Description

BnaCnng23260DSucrose synthase [Source:UniProtKB/TrEMBL;Acc:A0A078ISF2]

Coordinates

chrLK033130:-:38801..43799

Molecular Weight (calculated)

92388.9 Da

IEP (calculated)

6.299

GRAVY (calculated)

-0.277

Length

811 amino acids

Sequence
(BLAST)

001: MSNPRLTRIL SMRERVQDTL SAHRNELVAL LSRYVDQGKG ILKPHNLIDE LESIIGDDDA RKKSLSDGPF GEILKSAMEA IVIPPFVALA VRPRQGVWEY
101: VRVNVYELSV EQLTVSEYLC FKEELVDGAS SSDPFRLELD FEPFNANVPR PSRSSSIGNG VQFLNRHLSS VMFRNKDCLE PLLDFLRVHK YKGHPLMLND
201: RIQSISRLQS QLSKAEDHIS KLPEETPFSE FEYSIQGMGF EKGWGDTVGR VLQMMYLLSD ILQAPDPSSL EKFLGMVPMV FNVVILSPHG YFGQANVLGL
301: PDTGGQVVYI LDQVRALETE MLLRIKRQGL DITPRILIVT RLIPDAKGTT CNQRLERVSG TEHTHILRVP FRSDKGILRK WISRFDVWPY LENYAQDAAS
401: EIVGELQGVP DFIIGNYSDG NLVASLMAHK MGVTQCTIAH ALEKTKYPDS DIYWKDFDNK YHFSCQFTAD LIAMNNADFI ITSTYQEIAG TKNTVGQYES
501: HGAFTLPGLY RVVHGIDVFD PKFNIVSPGA DMTIYFPFTE SEKRLTALHG SIEEMLYSPE QTDEHVGTLS DRSKPILFSM ARLDKVKNIS GLVEMYGKNT
601: KLRELVNLVV IAGNIDVNKS KDREEISEIE KMHNLIKNYK LEGQFRWITA QTNRARNGEL YRYIADTKGA FAQPAFYEAF GLTVVEAMTC GLPTFATLHG
701: GPAEIIEHGV SGFHIDPYHP EQAGNIMAEF FQRCKEDPNH WNKVSDCGLQ RIYERYTWKI YSERLMALAG VYGFWKYVSK LERRETRRYL EMFYILKFRD
801: LVKTVPLSDD E

Best Arabidopsis Sequence Match ( AT4G02280.1 )
(BLAST)

001: MANPKLTRVL STRDRVQDTL SAHRNELVAL LSRYVDQGKG ILQPHNLIDE LESVIGDDET KKSLSDGPFG EILKSAMEAI VVPPFVALAV RPRPGVWEYV
101: RVNVFELSVE QLTVSEYLRF KEELVDGPNS DPFCLELDFE PFNANVPRPS RSSSIGNGVQ FLNRHLSSVM FRNKDCLEPL LDFLRVHKYK GHPLMLNDRI
201: QSISRLQIQL SKAEDHISKL SQETPFSEFE YALQGMGFEK GWGDTAGRVL EMMHLLSDIL QAPDPSSLEK FLGMVPMVFN VVILSPHGYF GQANVLGLPD
301: TGGQVVYILD QVRALETEML LRIKRQGLDI SPSILIVTRL IPDAKGTTCN QRLERVSGTE HTHILRVPFR SEKGILRKWI SRFDVWPYLE NYAQDAASEI
401: VGELQGVPDF IIGNYSDGNL VASLMAHRMG VTQCTIAHAL EKTKYPDSDI YWKDFDNKYH FSCQFTADLI AMNNADFIIT STYQEIAGTK NTVGQYESHG
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM TIYFPYSEET RRLTALHGSI EEMLYSPDQT DEHVGTLSDR SKPILFSMAR LDKVKNISGL VEMYSKNTKL
601: RELVNLVVIA GNIDVNKSKD REEIVEIEKM HNLMKNYKLD GQFRWITAQT NRARNGELYR YIADTRGAFA QPAFYEAFGL TVVEAMTCGL PTFATCHGGP
701: AEIIEHGLSG FHIDPYHPEQ AGNIMADFFE RCKEDPNHWK KVSDAGLQRI YERYTWKIYS ERLMTLAGVY GFWKYVSKLE RRETRRYLEM FYILKFRDLV
801: KTVPSTADD

Arabidopsis Description

SUS3Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6L8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.