Factsheet for TraesCS4A01G140000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, unclear, golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G140000.1
TraesCS4B01G167500.1
TraesCS4D01G169800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	TraesCS4A01G140000.1	AT4G02280.1	21798944
AT4G02280.1	TraesCS4B01G167500.1	AT4G02280.1	21798944
AT4G02280.1	TraesCS4D01G169800.1	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G169800.1	Wheat	cytosol	98.39	98.39
TraesCS4B01G167500.1	Wheat	cytosol	98.02	98.02
HORVU4Hr1G049500.3	Barley	cytosol	96.79	96.67
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	91.22	91.22
EER92301	Sorghum	cytosol	91.1	91.1
VIT_12s0057g00130.t01	Wine grape	cytosol	18.05	82.49
VIT_00s1562g00010.t01	Wine grape	cytosol	17.92	81.92
GSMUA_Achr3P08200_001	Banana	mitochondrion	18.29	81.77
GSMUA_Achr8P22470_001	Banana	cytosol	81.33	81.33
VIT_07s0005g00750.t01	Wine grape	cytosol	80.72	80.52
VIT_05s0077g01930.t01	Wine grape	cytosol	79.11	79.21
VIT_10s0071g00070.t01	Wine grape	cytosol	7.91	79.01
GSMUA_Achr3P08190_001	Banana	cytosol	60.94	79.01
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	78.74	78.45
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	78.74	78.45
Bra036282.1-P	Field mustard	cytosol, mitochondrion	78.0	77.81
AT4G02280.1	Thale cress	mitochondrion	77.75	77.75
CDY22042	Canola	cytosol, mitochondrion	77.87	77.68
CDY52781	Canola	mitochondrion	77.87	77.68
Solyc09g098590.2.1	Tomato	cytosol	77.38	77.09
PGSC0003DMT400017087	Potato	cytosol	77.01	76.82
Zm00001d010801_P001	Maize	cytosol	22.5	74.29
KRH12090	Soybean	endoplasmic reticulum	73.05	73.69
CDX86250	Canola	cytosol	71.32	73.22
CDX85398	Canola	cytosol	72.93	73.11
Bra037432.1-P	Field mustard	cytosol	72.68	72.86
AT5G49190.1	Thale cress	cytosol	72.44	72.61
TraesCS7A01G158900.1	Wheat	golgi, nucleus	69.47	69.55
TraesCS4A01G446700.1	Wheat	cytosol	68.11	67.61
TraesCS7A01G040900.2	Wheat	cytosol	68.11	67.61
TraesCS2A01G168200.1	Wheat	golgi, unclear	68.48	66.67
VIT_10s0071g00080.t01	Wine grape	cytosol	6.06	63.64
TraesCS4A01G492600.1	Wheat	cytosol	43.02	62.14
TraesCS2A01G406700.1	Wheat	cytosol	57.73	54.05
TraesCS7A01G557600.1	Wheat	cytosol	57.23	53.77
CDX87785	Canola	cytosol	10.51	52.8
CDY46981	Canola	cytosol, nucleus, plastid	15.2	35.86
TraesCS3A01G425500.1	Wheat	nucleus	21.51	16.2
TraesCS7A01G518200.1	Wheat	cytosol	19.28	16.05
TraesCS3A01G015500.1	Wheat	golgi	20.64	15.59
TraesCS6A01G144800.1	Wheat	cytoskeleton, cytosol, nucleus	18.54	15.56
TraesCS4A01G225100.1	Wheat	cytosol	19.53	14.93

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	InterPro:Glyco_trans_1	PFAM:PF00534	PFAM:PF00862
PANTHER:PTHR12526	PANTHER:PTHR12526:SF509	SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470
EnsemblPlantsGene:TraesCS4A01G140000	EnsemblPlants:TraesCS4A01G140000.1	TIGR:cd03800	:	:	:

Description

No Description!

Coordinates

chr4A:-:213025234..213035985

Molecular Weight (calculated)

92307.8 Da

IEP (calculated)

6.719

GRAVY (calculated)

-0.257

Length

809 amino acids

Sequence
(BLAST)

001: MAASKLDRTP SIRERVEDTL HAHRNELVAL LSKYVSKGKG ILQPHRILDT LDEVQVSGGS AFAEGPFLDV LRSSQEAIVL PPFVAIAVRP RPGVWEYVRV
101: NVHELNVEQL SVSEYLRFKE ELVDGQHKDP YVLELDFEPF TALIPRPSRS SSIGNGVQFL NRHLSSILFR NRDCLEPLLD FLREHRHKGH VMMLNDRVQS
201: VGRLQSVLTK AEEHLSKLPS ETPYSQFSNQ FQEWGLEKGW GDTTEHVLEM IHLLLDILQA PDPSTLETFL GRIPMIFNVV IVSPHGYFGQ ANVLGMPDTG
301: GQIVYILDQV RALEDEMVLR LKKQGLDVTP KIIIVTRLIP DSKGTSCNQR LERISGTQHT FILRVPFRNE NGVLRKWISR FDVWPYLEKF AEDAAGEIAA
401: ELQGTPDFII GNYSDGNLVA SLLSYKMGIT QCNIAHALEK TKYPDSDIYW KKFDEKYHFS CQFTADIIAM NNADFIITST YQEIAGSKNT VGQYESHTAF
501: TLPGLYRVVH GIDVFDPKFN IVSPGADMSI YFPFTEKDKR LTALHGSIES LIYDPEQNDV HIGHLDDRSK PILFSMARLD RVKNMTGLVE AYSKNAKLRS
601: LVNLVVVAGY NNVKKSKDRE EIAEIEKMHE LIKTYNLFGQ FRWISAQTNR ARNGELYRYI ADTHGAFVQP ALYEAFGLTV VEAMTCGLPT FATLHGGPAE
701: IIEHGISGFH IDPYHPDQAA TLMADFFEKC KQDPNHWVKI SDRGLQRIYE KYTWKIYSER LMTLAGVYGF WKYVSKLERR ETRRYLEMFY ILKLRELVKS
801: VPLAIDEAH

Best Arabidopsis Sequence Match ( AT4G02280.1 )
(BLAST)

001: MANPKLTRVL STRDRVQDTL SAHRNELVAL LSRYVDQGKG ILQPHNLIDE LESVIGDDET KKSLSDGPFG EILKSAMEAI VVPPFVALAV RPRPGVWEYV
101: RVNVFELSVE QLTVSEYLRF KEELVDGPNS DPFCLELDFE PFNANVPRPS RSSSIGNGVQ FLNRHLSSVM FRNKDCLEPL LDFLRVHKYK GHPLMLNDRI
201: QSISRLQIQL SKAEDHISKL SQETPFSEFE YALQGMGFEK GWGDTAGRVL EMMHLLSDIL QAPDPSSLEK FLGMVPMVFN VVILSPHGYF GQANVLGLPD
301: TGGQVVYILD QVRALETEML LRIKRQGLDI SPSILIVTRL IPDAKGTTCN QRLERVSGTE HTHILRVPFR SEKGILRKWI SRFDVWPYLE NYAQDAASEI
401: VGELQGVPDF IIGNYSDGNL VASLMAHRMG VTQCTIAHAL EKTKYPDSDI YWKDFDNKYH FSCQFTADLI AMNNADFIIT STYQEIAGTK NTVGQYESHG
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM TIYFPYSEET RRLTALHGSI EEMLYSPDQT DEHVGTLSDR SKPILFSMAR LDKVKNISGL VEMYSKNTKL
601: RELVNLVVIA GNIDVNKSKD REEIVEIEKM HNLMKNYKLD GQFRWITAQT NRARNGELYR YIADTRGAFA QPAFYEAFGL TVVEAMTCGL PTFATCHGGP
701: AEIIEHGLSG FHIDPYHPEQ AGNIMADFFE RCKEDPNHWK KVSDAGLQRI YERYTWKIYS ERLMTLAGVY GFWKYVSKLE RRETRRYLEM FYILKFRDLV
801: KTVPSTADD

Arabidopsis Description

SUS3Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6L8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.