Factsheet for GSMUA_Achr3P08200_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P08190_001
GSMUA_Achr3P08200_001
GSMUA_Achr8P22470_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	GSMUA_Achr3P08190_001	AT4G02280.1	21798944
AT4G02280.1	GSMUA_Achr3P08200_001	AT4G02280.1	21798944
AT4G02280.1	GSMUA_Achr8P22470_001	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87785	Canola	cytosol	34.25	38.51
CDY46981	Canola	cytosol, nucleus, plastid	37.57	19.83
GSMUA_Achr8P22470_001	Banana	cytosol	82.87	18.54
TraesCS4D01G169800.1	Wheat	cytosol	82.32	18.42
TraesCS4B01G167500.1	Wheat	cytosol	82.32	18.42
TraesCS4A01G140000.1	Wheat	cytosol, golgi, unclear	81.77	18.29
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	81.22	18.17
EER92301	Sorghum	cytosol	80.66	18.05
HORVU4Hr1G049500.3	Barley	cytosol	80.66	18.02
VIT_07s0005g00750.t01	Wine grape	cytosol	80.66	18.0
Zm00001d029091_P003	Maize	cytosol	80.66	17.72
KRH12090	Soybean	endoplasmic reticulum	78.45	17.71
Bra036282.1-P	Field mustard	cytosol, mitochondrion	78.45	17.51
CDY22042	Canola	cytosol, mitochondrion	78.45	17.51
Solyc09g098590.2.1	Tomato	cytosol	78.45	17.49
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	78.45	17.49
VIT_05s0077g01930.t01	Wine grape	cytosol	77.9	17.45
CDY52781	Canola	mitochondrion	77.9	17.39
CDX86250	Canola	cytosol	75.69	17.39
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	77.9	17.36
PGSC0003DMT400017087	Potato	cytosol	77.35	17.26
Zm00001d029087_P002	Maize	cytosol	80.66	17.2
AT4G02280.1	Thale cress	mitochondrion	76.8	17.18
Bra037432.1-P	Field mustard	cytosol	75.69	16.98
AT5G49190.1	Thale cress	cytosol	75.14	16.85
CDX85398	Canola	cytosol	75.14	16.85
GSMUA_Achr7P19810_001	Banana	mitochondrion	75.69	16.79
GSMUA_Achr6P10890_001	Banana	unclear	73.48	16.32
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	72.93	16.18
GSMUA_Achr3P01900_001	Banana	mitochondrion	71.82	15.93
GSMUA_Achr2P21870_001	Banana	cytosol	71.27	15.83
GSMUA_Achr3P13980_001	Banana	cytosol	58.56	12.56
GSMUA_Achr9P21240_001	Banana	cytosol	56.35	12.09
VIT_10s0071g00080.t01	Wine grape	cytosol	3.31	7.79
GSMUA_Achr4P06050_001	Banana	cytosol	32.04	5.48
GSMUA_Achr9P22510_001	Banana	cytosol	30.94	5.28
GSMUA_Achr4P16070_001	Banana	nucleus	30.94	5.18
GSMUA_Achr6P17480_001	Banana	nucleus	28.73	4.99
Zm00001d010801_P001	Maize	cytosol	2.76	2.04
GSMUA_Achr3P08190_001	Banana	cytosol	1.66	0.48
VIT_00s1562g00010.t01	Wine grape	cytosol	0.0	0.0
VIT_10s0071g00070.t01	Wine grape	cytosol	0.0	0.0
VIT_12s0057g00130.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr3P08200_001	EnsemblPlants:GSMUA_Achr3T08200_001	EnsemblPlantsGene:GSMUA_Achr3G08200_001	Gene3D:3.40.50.2000	InterPro:Glyco_trans_1	PANTHER:PTHR12526
PANTHER:PTHR12526:SF509	PFAM:PF00534	SUPFAM:SSF53756	UniParc:UPI0002959466	UniProt:M0SCT7	MapMan:3.1.4.2

Description

Sucrose synthase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G08200_001]

Coordinates

chr3:+:5803207..5804031

Molecular Weight (calculated)

21075.1 Da

IEP (calculated)

7.658

GRAVY (calculated)

-0.318

Length

181 amino acids

Sequence
(BLAST)

001: MHQLIRTYNL FGQFRWISSQ MNRARNGELY RYIADTRGAF VQPAFYEGFG LTVVEASTCG LPTFATCHGG PAEIIEHGVS GFHIDPHHPD KAAALMVEFF
101: EHCKEDADYW NSISKGGLSR IYERYTWKIY SERLMTLAGV YGFWKNVSKL ERRETRRYLE MFYVVQFREL VKSVPLAVDE H

Best Arabidopsis Sequence Match ( AT4G02280.1 )
(BLAST)

001: MANPKLTRVL STRDRVQDTL SAHRNELVAL LSRYVDQGKG ILQPHNLIDE LESVIGDDET KKSLSDGPFG EILKSAMEAI VVPPFVALAV RPRPGVWEYV
101: RVNVFELSVE QLTVSEYLRF KEELVDGPNS DPFCLELDFE PFNANVPRPS RSSSIGNGVQ FLNRHLSSVM FRNKDCLEPL LDFLRVHKYK GHPLMLNDRI
201: QSISRLQIQL SKAEDHISKL SQETPFSEFE YALQGMGFEK GWGDTAGRVL EMMHLLSDIL QAPDPSSLEK FLGMVPMVFN VVILSPHGYF GQANVLGLPD
301: TGGQVVYILD QVRALETEML LRIKRQGLDI SPSILIVTRL IPDAKGTTCN QRLERVSGTE HTHILRVPFR SEKGILRKWI SRFDVWPYLE NYAQDAASEI
401: VGELQGVPDF IIGNYSDGNL VASLMAHRMG VTQCTIAHAL EKTKYPDSDI YWKDFDNKYH FSCQFTADLI AMNNADFIIT STYQEIAGTK NTVGQYESHG
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM TIYFPYSEET RRLTALHGSI EEMLYSPDQT DEHVGTLSDR SKPILFSMAR LDKVKNISGL VEMYSKNTKL
601: RELVNLVVIA GNIDVNKSKD REEIVEIEKM HNLMKNYKLD GQFRWITAQT NRARNGELYR YIADTRGAFA QPAFYEAFGL TVVEAMTCGL PTFATCHGGP
701: AEIIEHGLSG FHIDPYHPEQ AGNIMADFFE RCKEDPNHWK KVSDAGLQRI YERYTWKIYS ERLMTLAGVY GFWKYVSKLE RRETRRYLEM FYILKFRDLV
801: KTVPSTADD

Arabidopsis Description

SUS3Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6L8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.