Factsheet for GSMUA_Achr6P10890_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	96.32	96.2
GSMUA_Achr2P21870_001	Banana	cytosol	94.6	94.6
GSMUA_Achr3P01900_001	Banana	mitochondrion	94.36	94.24
HORVU0Hr1G019020.1	Barley	cytosol	15.71	85.91
OQU92441	Sorghum	cytosol	84.54	84.44
Zm00001d047253_P003	Maize	cytosol	84.42	84.31
Os03t0401300-01	Rice	extracellular	84.17	84.07
Os07t0616800-01	Rice	cytosol	83.8	83.7
HORVU2Hr1G030870.1	Barley	plasma membrane	83.56	83.46
TraesCS7D01G036600.2	Wheat	golgi	83.19	83.19
HORVU7Hr1G007220.8	Barley	cytosol	83.19	83.19
TraesCS7A01G040900.2	Wheat	cytosol	83.07	83.07
TraesCS4A01G446700.1	Wheat	cytosol	83.07	83.07
GSMUA_Achr7P19810_001	Banana	mitochondrion	82.82	82.72
TraesCS2A01G168200.1	Wheat	golgi, unclear	84.17	82.55
HORVU5Hr1G050660.1	Barley	cytosol	4.05	82.5
TraesCS2D01G175600.1	Wheat	golgi, unclear	84.17	82.45
HORVU7Hr1G033230.2	Barley	mitochondrion	81.72	82.32
TraesCS2B01G194200.1	Wheat	golgi	83.93	82.31
TraesCS7A01G158900.1	Wheat	golgi, nucleus	81.6	82.3
KXG19528	Sorghum	mitochondrion	80.98	82.29
Os06t0194900-03	Rice	extracellular	80.74	81.44
Zm00001d045042_P014	Maize	cytosol, mitochondrion	80.74	80.05
TraesCS7B01G063400.1	Wheat	mitochondrion	80.86	79.78
TraesCS7D01G159800.1	Wheat	mitochondrion	80.74	79.66
KRH19379	Soybean	cytosol	76.56	77.52
VIT_11s0016g00470.t01	Wine grape	cytosol	77.3	77.3
KRH02557	Soybean	cytosol, endoplasmic reticulum, extracellular, mitochondrion	76.2	77.14
KRH12615	Soybean	endoplasmic reticulum	75.09	75.93
CDX88838	Canola	endoplasmic reticulum, golgi	69.2	75.91
PGSC0003DMT400007505	Potato	cytosol	74.23	75.16
KRH37557	Soybean	endoplasmic reticulum	74.6	75.06
Solyc12g009300.1.1	Tomato	nucleus	74.11	75.03
Solyc07g042550.2.1	Tomato	extracellular	74.11	75.03
AT3G43190.1	Thale cress	cytosol	73.86	74.5
Bra002332.1-P	Field mustard	cytosol	71.78	74.43
CDY16569	Canola	cytosol	73.13	74.04
PGSC0003DMT400035262	Potato	cytosol	73.37	74.01
CDX92432	Canola	cytosol	73.01	73.91
Bra006578.1-P	Field mustard	cytosol	72.76	73.57
AT5G20830.1	Thale cress	cytosol	72.88	73.51
GSMUA_Achr3P08200_001	Banana	mitochondrion	16.32	73.48
CDX70945	Canola	cytosol	72.52	73.33
GSMUA_Achr8P22470_001	Banana	cytosol	71.78	72.31
GSMUA_Achr3P08190_001	Banana	cytosol	53.74	70.19
PGSC0003DMT400035264	Potato	cytosol	67.12	68.12
Solyc07g042520.2.1	Tomato	cytosol, extracellular	66.87	67.87
GSMUA_Achr3P13980_001	Banana	cytosol	56.2	54.27
GSMUA_Achr9P21240_001	Banana	cytosol	55.71	53.79
GSMUA_Achr4P06050_001	Banana	cytosol	20.37	15.68
GSMUA_Achr6P17480_001	Banana	nucleus	20.0	15.63
GSMUA_Achr9P22510_001	Banana	cytosol	20.25	15.55
GSMUA_Achr4P16070_001	Banana	nucleus	20.61	15.53

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	EnsemblPlantsGene:GSMUA_Achr6G10890_001	EnsemblPlants:GSMUA_Achr6P10890_001	EnsemblPlants:GSMUA_Achr6T10890_001
InterPro:Glyco_trans_1	UniProt:M0T5Y8	PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF398
SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI000295DE1C	:

Description

Sucrose synthase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10890_001]

Coordinates

chr6:-:7254980..7259503

Molecular Weight (calculated)

92821.2 Da

IEP (calculated)

6.365

GRAVY (calculated)

-0.281

Length

815 amino acids

Sequence
(BLAST)

001: MPQRTLTRAH SVRERIGDSL SSHPNELVAL FSRFINQGKG MLQPHQLLAE YAAAFSEADR EKLKDGAFED VIKAAQEAIV IPPWVALAIR PRPGVWEHVR
101: VNISELAVEE LTVPEYLHFK EELVDGSSQN NNFVLELDFE PFNASFPRPS LSKSIGNGVQ FLNRHLSSKL FHDKESMYPL LNFLRQHNYK GMSMMLNDRI
201: QSLSALQAAL RKAEQHLLSI PSATPYSEFN HRFQELGLEK GWGDTAQRVY ENIHLLLDLL EAPDPCTLEN FLGTIPMMFN VVILSPHGYF AQANVLGYPD
301: TGGQVVYILD QVRALENEML LRIKRQGLDI TPRILIVTRL LPDAVGTTCG QKLEKVIGTE HTHILRVPFR TENGIVRKWI SRFEVWPYLE TYTEDVANEL
401: AGELQTTPDL IIGNYSDGNL VSTLLAHKLG VTQCTIAHAL EKTKYPNSDI YWKKFENQYH FSCQFTADLI AMNHADFIIT STFQEIAGSK DTVGQYESHT
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADL SIYFPYTEKQ KRLTSLHPEI EELLFNPEDN TEHKGVLNDT KKPIIFSMAR LDRVKNLTGL VEFYGRNERL
601: KELVNLVVVC GDHGKESKDL EEQAEFKKMY DLIEKYNLNG HIRWISAQMN RVRNGELYRY IADTKGAFIQ PAFYEAFGLT VVESMTCGLP TFATVHGGPG
701: EIIVDGVSGF HIDPYQGDKA AEIIVNFFEK CKEDPTHWDK ISLGGLKRIE EKYTWKLYSE RLMTLSGVYG FWKYVSNLDR RETRRYLEMF YALKYRNLAK
801: SVPLAVDGEA INGSK

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.