Factsheet for GSMUA_Achr3P08190_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P08190_001
GSMUA_Achr3P08200_001
GSMUA_Achr8P22470_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	GSMUA_Achr3P08190_001	AT4G02280.1	21798944
AT4G02280.1	GSMUA_Achr3P08200_001	AT4G02280.1	21798944
AT4G02280.1	GSMUA_Achr8P22470_001	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g00130.t01	Wine grape	cytosol	24.52	86.44
VIT_00s1562g00010.t01	Wine grape	cytosol	24.36	85.88
VIT_10s0071g00070.t01	Wine grape	cytosol	10.42	80.25
GSMUA_Achr8P22470_001	Banana	cytosol	88.3	68.11
Zm00001d010801_P001	Maize	cytosol	25.64	65.31
VIT_07s0005g00750.t01	Wine grape	cytosol	82.37	63.38
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	81.41	62.79
EER92301	Sorghum	cytosol	81.25	62.67
VIT_05s0077g01930.t01	Wine grape	cytosol	80.45	62.13
TraesCS4D01G169800.1	Wheat	cytosol	79.97	61.68
HORVU4Hr1G049500.3	Barley	cytosol	79.97	61.6
Zm00001d029091_P003	Maize	cytosol	81.25	61.53
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	79.65	61.21
TraesCS4B01G167500.1	Wheat	cytosol	79.33	61.19
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	79.49	61.08
TraesCS4A01G140000.1	Wheat	cytosol, golgi, unclear	79.01	60.94
Solyc09g098590.2.1	Tomato	cytosol	77.72	59.73
Zm00001d029087_P002	Maize	cytosol	81.25	59.72
PGSC0003DMT400017087	Potato	cytosol	77.4	59.56
AT4G02280.1	Thale cress	mitochondrion	76.92	59.33
Bra036282.1-P	Field mustard	cytosol, mitochondrion	77.08	59.31
CDY52781	Canola	mitochondrion	76.92	59.19
CDY22042	Canola	cytosol, mitochondrion	76.92	59.19
KRH12090	Soybean	endoplasmic reticulum	74.84	58.23
VIT_10s0071g00080.t01	Wine grape	cytosol	7.05	57.14
CDX85398	Canola	cytosol	73.72	57.0
AT5G49190.1	Thale cress	cytosol	73.56	56.88
Bra037432.1-P	Field mustard	cytosol	73.24	56.63
CDX86250	Canola	cytosol	71.15	56.35
GSMUA_Achr3P01900_001	Banana	mitochondrion	70.67	54.04
GSMUA_Achr6P10890_001	Banana	unclear	70.19	53.74
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	70.19	53.68
GSMUA_Achr2P21870_001	Banana	cytosol	69.71	53.37
GSMUA_Achr7P19810_001	Banana	mitochondrion	69.23	52.94
GSMUA_Achr9P21240_001	Banana	cytosol	57.69	42.65
GSMUA_Achr3P13980_001	Banana	cytosol	56.57	41.82
CDY46981	Canola	cytosol, nucleus, plastid	7.53	13.7
CDX87785	Canola	cytosol	3.53	13.66
GSMUA_Achr4P16070_001	Banana	nucleus	18.43	10.63
GSMUA_Achr9P22510_001	Banana	cytosol	17.95	10.56
GSMUA_Achr6P17480_001	Banana	nucleus	17.63	10.55
GSMUA_Achr4P06050_001	Banana	cytosol	17.79	10.48
GSMUA_Achr3P08200_001	Banana	mitochondrion	0.48	1.66

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	EnsemblPlantsGene:GSMUA_Achr3G08190_001	EnsemblPlants:GSMUA_Achr3P08190_001	EnsemblPlants:GSMUA_Achr3T08190_001
UniProt:M0SCT6	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF509	SUPFAM:SSF53756	InterPro:Sucrose_synth
InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI00029559D1	:	:	:

Description

Sucrose synthase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G08190_001]

Coordinates

chr3:+:5795707..5803202

Molecular Weight (calculated)

71070.7 Da

IEP (calculated)

6.662

GRAVY (calculated)

-0.216

Length

624 amino acids

Sequence
(BLAST)

001: MGSPKLGFIP SMRERVEDTL SAYRNVLVSL LSRYVSQGKG LLQPHHLLDA LATLGYDART KLSEGPFSDV LKSAQEAVVM PPFVAIAVRP RPGIWEYVRV
101: NVHELSVEQL SVSEYLQFKE ELEDERSNDR YVLELDFEPF NASFPRPIQS SSIGNGVQFL NRHLSSIMLH NKDCLEPLLN FLRAHKYKDH VMMLNDRIQS
201: MSRLQSVLTK ADEYLSMLPP ETPFSEFAYV FQEMGLERGW GDTARRVLEM IHLLLDILQA PDPSTLEVFL GRIPMVFNVV ILSPHGYFSQ ANVLGLPDTG
301: GQVVYILDQV RALENEMLLR IKKQGLDIYP KILIVTRLIP DAKGTTCNQR LERISGTQHT WILRVPFKTE KGILKKWISR FDVWPYLEKF AEDAASEIAA
401: ELHGAPDLII GNYSDGNLVA SLLSYKLGIT QCNIAHALEK TKYPDSDIYW KKYEDKYHFS CQFTADLIAM NNADFIITST YQEIAGSKNA VGQYESHTAF
501: TLPGLYRVVH GIDVFDPKFN IVSPGADMGI YFPYSEKERR LTCLRGSIKK LLYDQEQCDE HIGWLDDRSK PIIFSMARLD RVKNITGLVE LFGKSEKLRE
601: LVNLVVVAGH NDVKKSNDRR NPRD

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.