Factsheet for Zm00001d029087_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010801_P001
Zm00001d029087_P002
Zm00001d029091_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	Zm00001d010801_P001	AT4G02280.1	21798944
AT4G02280.1	Zm00001d029087_P002	AT4G02280.1	21798944
AT4G02280.1	Zm00001d029091_P003	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029091_P003	Maize	cytosol	94.94	97.82
EER92301	Sorghum	cytosol	92.46	97.03
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	89.75	94.19
VIT_12s0057g00130.t01	Wine grape	cytosol	17.31	83.05
VIT_00s1562g00010.t01	Wine grape	cytosol	17.2	82.49
GSMUA_Achr8P22470_001	Banana	cytosol	78.56	82.45
VIT_07s0005g00750.t01	Wine grape	cytosol	77.97	81.63
GSMUA_Achr3P08190_001	Banana	cytosol	59.72	81.25
GSMUA_Achr3P08200_001	Banana	mitochondrion	17.2	80.66
AT4G02280.1	Thale cress	mitochondrion	75.74	79.48
VIT_05s0077g01930.t01	Wine grape	cytosol	75.5	79.33
CDY22042	Canola	cytosol, mitochondrion	75.74	79.28
Bra036282.1-P	Field mustard	cytosol, mitochondrion	75.74	79.28
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	75.5	78.94
CDY52781	Canola	mitochondrion	75.38	78.91
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	75.38	78.82
Solyc09g098590.2.1	Tomato	cytosol	75.27	78.69
PGSC0003DMT400017087	Potato	cytosol	74.79	78.3
Zm00001d010801_P001	Maize	cytosol	22.26	77.14
VIT_10s0071g00070.t01	Wine grape	cytosol	7.3	76.54
KRH12090	Soybean	endoplasmic reticulum	71.26	75.44
CDX86250	Canola	cytosol	68.67	73.98
CDX85398	Canola	cytosol	70.2	73.85
AT5G49190.1	Thale cress	cytosol	69.96	73.61
Bra037432.1-P	Field mustard	cytosol	69.96	73.61
Zm00001d047253_P003	Maize	cytosol	66.31	69.0
Zm00001d045042_P014	Maize	cytosol, mitochondrion	66.31	68.49
VIT_10s0071g00080.t01	Wine grape	cytosol	5.77	63.64
Zm00001d051837_P002	Maize	cytosol	51.24	51.12
CDX87785	Canola	cytosol	9.54	50.31
Zm00001d014119_P001	Maize	cytosol	6.83	37.91
Zm00001d050151_P001	Maize	cytosol	6.01	37.23
CDY46981	Canola	cytosol, nucleus, plastid	13.78	34.11
Zm00001d015570_P002	Maize	cytosol	19.08	16.8
Zm00001d012036_P001	Maize	nucleus	20.61	16.39
Zm00001d042353_P003	Maize	nucleus	20.38	16.03
Zm00001d036749_P001	Maize	cytosol	17.9	15.59
Zm00001d050125_P002	Maize	nucleus	19.32	15.49
Zm00001d046595_P002	Maize	cytosol	16.84	14.62
Zm00001d016399_P002	Maize	extracellular	2.59	14.01
Zm00001d048979_P001	Maize	cytosol	16.02	13.32

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	EntrezGene:103634623	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000
UniProt:A0A1D6K2D7	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757
InterPro:Glyco_trans_1	ProteinID:ONL97855.1	PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF509
SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI000842BCFC	EnsemblPlantsGene:Zm00001d029087
EnsemblPlants:Zm00001d029087_P002	EnsemblPlants:Zm00001d029087_T002	SEG:seg	:	:	:

Description

Sucrose synthase 3

Coordinates

chr1:-:57457546..57464810

Molecular Weight (calculated)

96442.0 Da

IEP (calculated)

6.701

GRAVY (calculated)

-0.167

Length

849 amino acids

Sequence
(BLAST)

001: MSAPKLDRNP SIRDRVEDTL HAHRNELVAL LSKYVNKGKG ILQPHHILDA LDEVQGSGGR ALAEGPFLDV LRSAQEAIVL PPFVAIAVRP RPGVWEYVRV
101: NVHELSVEQL TVSEYLRFKE ELVDGQHNDP YVLELDFEPF NVSVPRPNRS SSIGNGVQFL NRHLSSIMFR NRDCLEPLLD FLRGHRHKGH VMMLNDRIQS
201: LGRLQSVLTK AEEHLSKLPA DTPYSQFAYK FQEWGLEKGW GDTAGHVLEM IHLLLDIIQA PDPSTLEKFL GRIPMIFNVV VVSPHGYFGQ ANVLGLPDTG
301: GQIVYILDQV RALENEMVLR LKKQGLDVSP KILIVTRLIP DAKGTSCNQR LERISGTQHT YILRVPFRNE NGILKKWISR FDVWPYLETF AEDAAGEIAA
401: ELQGTPDFII GNYSDGNLVA SLLSYKMGIT QCNIAHALEK TKYPDSDIFW KNFDEKYHFS CQFTADIIAM NNADFIITST YQEIAGSKNT VGQYESHTAF
501: TLPGLYRVVH GIDVFDPKFN IVSPGADMSI YFPHTEKAKR LTSLHGSIEN LIYDPEQNDE HIGHLDDRSK PILFSMARLD RVKNITGLVE AFAKCAKLRE
601: LVNLVVVAGY NDVNKSKDRE EIAEIEKMHE LIKTHNLFGQ FRWISAQTNR ARNGELYRYI ADTHGAFVQP AFYEAFGLTV VEAMTCGLPT FATLHGGPAE
701: IIEHGVSGFH IDPYHPEQAA NLMADFFERC KQDPDHWVKI SGAGLQRIYE KSVLEILFYS WLVSSVMLIF FRTCCVPRYT WKIYSERLMT LAGVYGFWKY
801: VSKLERLETR RYLEMFYILK FRELVCSVLS SLSLSITAKT VPLAIDQPQ

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.