Factsheet for GSMUA_Achr8P22470_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P08190_001
GSMUA_Achr3P08200_001
GSMUA_Achr8P22470_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	GSMUA_Achr3P08190_001	AT4G02280.1	21798944
AT4G02280.1	GSMUA_Achr3P08200_001	AT4G02280.1	21798944
AT4G02280.1	GSMUA_Achr8P22470_001	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P08190_001	Banana	cytosol	68.11	88.3
VIT_12s0057g00130.t01	Wine grape	cytosol	19.04	87.01
VIT_00s1562g00010.t01	Wine grape	cytosol	18.91	86.44
VIT_10s0071g00070.t01	Wine grape	cytosol	8.41	83.95
VIT_07s0005g00750.t01	Wine grape	cytosol	83.93	83.72
EER92301	Sorghum	cytosol	83.31	83.31
GSMUA_Achr3P08200_001	Banana	mitochondrion	18.54	82.87
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	82.32	82.32
VIT_05s0077g01930.t01	Wine grape	cytosol	82.2	82.3
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	82.57	82.27
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	82.57	82.27
TraesCS4D01G169800.1	Wheat	cytosol	81.83	81.83
TraesCS4A01G140000.1	Wheat	cytosol, golgi, unclear	81.33	81.33
HORVU4Hr1G049500.3	Barley	cytosol	81.21	81.11
TraesCS4B01G167500.1	Wheat	cytosol	80.96	80.96
Zm00001d029091_P003	Maize	cytosol	82.32	80.83
AT4G02280.1	Thale cress	mitochondrion	80.35	80.35
Bra036282.1-P	Field mustard	cytosol, mitochondrion	80.1	79.9
CDY22042	Canola	cytosol, mitochondrion	79.98	79.78
CDY52781	Canola	mitochondrion	79.85	79.65
Solyc09g098590.2.1	Tomato	cytosol	79.36	79.06
PGSC0003DMT400017087	Potato	cytosol	79.23	79.04
Zm00001d029087_P002	Maize	cytosol	82.45	78.56
KRH12090	Soybean	endoplasmic reticulum	76.76	77.43
AT5G49190.1	Thale cress	cytosol	76.14	76.33
CDX85398	Canola	cytosol	76.14	76.33
CDX86250	Canola	cytosol	74.29	76.27
Bra037432.1-P	Field mustard	cytosol	76.02	76.21
GSMUA_Achr6P10890_001	Banana	unclear	72.31	71.78
GSMUA_Achr3P01900_001	Banana	mitochondrion	72.19	71.57
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	72.06	71.45
GSMUA_Achr7P19810_001	Banana	mitochondrion	71.82	71.2
GSMUA_Achr2P21870_001	Banana	cytosol	71.69	71.17
Zm00001d010801_P001	Maize	cytosol	20.64	68.16
VIT_10s0071g00080.t01	Wine grape	cytosol	6.06	63.64
GSMUA_Achr9P21240_001	Banana	cytosol	57.97	55.57
GSMUA_Achr3P13980_001	Banana	cytosol	57.73	55.33
CDX87785	Canola	cytosol	10.75	54.04
CDY46981	Canola	cytosol, nucleus, plastid	15.2	35.86
GSMUA_Achr4P06050_001	Banana	cytosol	20.77	15.86
GSMUA_Achr9P22510_001	Banana	cytosol	20.77	15.83
GSMUA_Achr6P17480_001	Banana	nucleus	20.02	15.53
GSMUA_Achr4P16070_001	Banana	nucleus	20.77	15.53

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	EnsemblPlantsGene:GSMUA_Achr8G22470_001	EnsemblPlants:GSMUA_Achr8P22470_001	EnsemblPlants:GSMUA_Achr8T22470_001
InterPro:Glyco_trans_1	UniProt:M0TSQ0	PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF509
SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI0002966A4F	:

Description

Sucrose synthase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G22470_001]

Coordinates

chr8:-:27039253..27048032

Molecular Weight (calculated)

92285.9 Da

IEP (calculated)

6.591

GRAVY (calculated)

-0.231

Length

809 amino acids

Sequence
(BLAST)

001: MTTKKLERIP SMRERVEDTL SAYRNDLVSL LSRFVSQGKG MLQPHHLVDA LATLGDDGRT KLSEGPFSEV LRSAQEAIVL PPFVAIAIRP RPGVWEYVRV
101: NVYELSVEQL SVSEYLQFKE ELVDGRSDDR YTLELDFEPF NASFPRPNRS SSIGNGVLFL NRHLSSIMFR NKDCLEPLLD FLRAHKYKGH VMMLNDRVQS
201: VSRLQSVLAK AEEYLSKLIP ETPFSEFAYK LQEMGLEKGW GDTAQHVLEM IHLLLDILQA PDPSTLEMFL GRIPMVFNVV ILSPHGYFGQ ANVLGLPDTG
301: GQVVYILDQV RALENEMLLR IKKQGLDIDP KILIVTRLIP DAKGTTCNQR LERVSGTQHS HILRVPFRTE KGILKKWISR FDVWPYLETF TEDVASEIAA
401: ELHGTPDLVI GNYSDGNLVA SLLAYKLGIT QCNIAHALEK TKYPDSDIYW RKFEDKYHFS CQFTADLIAM NNADFIITST YQEIAGSKNT VGQYESHTAF
501: TLPGLYRVVH GIDVFDPKFN IVSPGADMSI YFTYSEKGKR LTSLHGSIEK LLYDPEQCDL HIGCLDDRSK PIIFSMARLD KVKNITGLVE WFGKSTKLRE
601: LVNLVVVAGY IDVKKSSDRE EIQEIEKMHQ LISSYNLSGQ FRWISAQTNR ARNGELYRYI ADTGGAFVQP AFYEAFGLTV VEAMTCGLPT FATCHGGPAE
701: IIENGLSGFH IDPYHPDQSA VVMVEFFERC KEDSGYWKKI SDGGLRRIQE RYTWKIYSER LMTLAGVYGF WKYVSKLERR ETRRYLEMFY ILKFRDLVKS
801: VPRAVDDDH

Best Arabidopsis Sequence Match ( AT4G02280.1 )
(BLAST)

001: MANPKLTRVL STRDRVQDTL SAHRNELVAL LSRYVDQGKG ILQPHNLIDE LESVIGDDET KKSLSDGPFG EILKSAMEAI VVPPFVALAV RPRPGVWEYV
101: RVNVFELSVE QLTVSEYLRF KEELVDGPNS DPFCLELDFE PFNANVPRPS RSSSIGNGVQ FLNRHLSSVM FRNKDCLEPL LDFLRVHKYK GHPLMLNDRI
201: QSISRLQIQL SKAEDHISKL SQETPFSEFE YALQGMGFEK GWGDTAGRVL EMMHLLSDIL QAPDPSSLEK FLGMVPMVFN VVILSPHGYF GQANVLGLPD
301: TGGQVVYILD QVRALETEML LRIKRQGLDI SPSILIVTRL IPDAKGTTCN QRLERVSGTE HTHILRVPFR SEKGILRKWI SRFDVWPYLE NYAQDAASEI
401: VGELQGVPDF IIGNYSDGNL VASLMAHRMG VTQCTIAHAL EKTKYPDSDI YWKDFDNKYH FSCQFTADLI AMNNADFIIT STYQEIAGTK NTVGQYESHG
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM TIYFPYSEET RRLTALHGSI EEMLYSPDQT DEHVGTLSDR SKPILFSMAR LDKVKNISGL VEMYSKNTKL
601: RELVNLVVIA GNIDVNKSKD REEIVEIEKM HNLMKNYKLD GQFRWITAQT NRARNGELYR YIADTRGAFA QPAFYEAFGL TVVEAMTCGL PTFATCHGGP
701: AEIIEHGLSG FHIDPYHPEQ AGNIMADFFE RCKEDPNHWK KVSDAGLQRI YERYTWKIYS ERLMTLAGVY GFWKYVSKLE RRETRRYLEM FYILKFRDLV
801: KTVPSTADD

Arabidopsis Description

SUS3Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6L8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.