Factsheet for Os03t0340500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0340500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	Os03t0340500-01	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92301	Sorghum	cytosol	93.82	93.82
Zm00001d029091_P003	Maize	cytosol	94.07	92.35
TraesCS4D01G169800.1	Wheat	cytosol	92.09	92.09
HORVU4Hr1G049500.3	Barley	cytosol	91.84	91.73
TraesCS4A01G140000.1	Wheat	cytosol, golgi, unclear	91.22	91.22
TraesCS4B01G167500.1	Wheat	cytosol	91.22	91.22
Zm00001d029087_P002	Maize	cytosol	94.19	89.75
GSMUA_Achr8P22470_001	Banana	cytosol	82.32	82.32
VIT_12s0057g00130.t01	Wine grape	cytosol	17.92	81.92
GSMUA_Achr3P08190_001	Banana	cytosol	62.79	81.41
VIT_07s0005g00750.t01	Wine grape	cytosol	81.58	81.38
VIT_00s1562g00010.t01	Wine grape	cytosol	17.8	81.36
GSMUA_Achr3P08200_001	Banana	mitochondrion	18.17	81.22
VIT_05s0077g01930.t01	Wine grape	cytosol	79.6	79.7
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	79.98	79.68
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	79.85	79.56
AT4G02280.1	Thale cress	mitochondrion	79.11	79.11
CDY22042	Canola	cytosol, mitochondrion	79.23	79.04
Bra036282.1-P	Field mustard	cytosol, mitochondrion	79.23	79.04
Solyc09g098590.2.1	Tomato	cytosol	79.23	78.94
CDY52781	Canola	mitochondrion	78.86	78.67
PGSC0003DMT400017087	Potato	cytosol	78.74	78.55
VIT_10s0071g00070.t01	Wine grape	cytosol	7.66	76.54
KRH12090	Soybean	endoplasmic reticulum	74.29	74.94
CDX86250	Canola	cytosol	72.44	74.37
AT5G49190.1	Thale cress	cytosol	74.04	74.23
CDX85398	Canola	cytosol	74.04	74.23
Bra037432.1-P	Field mustard	cytosol	73.79	73.98
Os06t0194900-03	Rice	extracellular	69.96	70.05
Os03t0401300-01	Rice	extracellular	69.72	69.12
Os07t0616800-01	Rice	cytosol	68.23	67.65
VIT_10s0071g00080.t01	Wine grape	cytosol	5.93	62.34
Os02t0831500-01	Rice	plastid	57.6	55.08
Os04t0249500-00	Rice	cytosol	56.24	53.91
Os04t0309600-01	Rice	cytosol, plasma membrane	56.0	53.67
CDX87785	Canola	cytosol	9.89	49.69
CDY46981	Canola	cytosol, nucleus, plastid	14.34	33.82
Os08t0301500-01	Rice	plasma membrane	21.51	16.32
Os01t0919400-01	Rice	plasma membrane	21.76	16.24
Os02t0184400-01	Rice	endoplasmic reticulum, golgi	20.15	16.12
Os11t0236100-01	Rice	cytosol, plasma membrane	6.67	10.61
Os06t0643800-01	Rice	plasma membrane	0.62	2.72

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	EntrezGene:4332788
ProteinID:ABF95853.1	EMBL:AK099406	EMBL:AK102158	ProteinID:BAF11978.1	ProteinID:BAS84118.1	ProteinID:BAS84119.1
ncoils:Coil	ProteinID:EAZ26864.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757
InterPro:Glyco_trans_1	EMBL:HQ895722	EMBL:JN944363	UniProt:K4FDV3	EnsemblPlantsGene:Os03g0340500	EnsemblPlants:Os03t0340500-01
PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF509	UniProt:Q10LP5	SUPFAM:SSF53756
InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI0000DB4D89	RefSeq:XP_015632177.1	:

Description

SUCROSE SYNTHASE 4Similar to Sucrose synthase (EC 2.4.1.13). (Os03t0340500-01);Similar to sucrose synthase2. (Os03t0340500-03)

Coordinates

chr3:-:12674467..12680655

Molecular Weight (calculated)

92222.4 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.269

Length

809 amino acids

Sequence
(BLAST)

001: MSGPKLDRTP SIRDRVEDTL HAHRNELVAL LSKYVSQGKG ILQPHHILDA LDEVQSSGGR ALVEGPFLDV LRSAQEAIVL PPFVAIAVRP RPGVWEYVRV
101: NVHELSVEQL TVSEYLRFKE ELVDGQYNDP YILELDFEPF NASVPRPNRS SSIGNGVQFL NRHLSSIMFR NKDCLEPLLD FLRGHRHKGH VMMLNDRIQS
201: LGRLQSVLTK AEEHLSKLPA DTPYSQFAYK FQEWGLEKGW GDTAGYVLEM IHLLLDVLQA PDPSTLETFL GRIPMIFNVV VVSPHGYFGQ ANVLGLPDTG
301: GQIVYILDQV RALENEMVLR LKKQGLDFTP KILIVTRLIP EAKGTSCNQR LERISGTQHT YILRVPFRNE NGILRKWISR FDVWPYLEKF AEDAAGEIAA
401: ELQGTPDFII GNYSDGNLVA SLLSYKMGIT QCNIAHALEK TKYPDSDIYW TKYDEKYHFS CQFTADIIAM NNADFIITST YQEIAGSKNT VGQYESHTAF
501: TLPGLYRIVH GIDVFDPKFN IVSPGADMSI YFPYTEKAKR LTSLHGSLEN LISDPEQNDE HIGHLDDRSK PILFSMARLD RVKNITGLVE AYAKNARLRE
601: LVNLVVVAGY NDVKKSKDRE EIAEIEKMHE LIKTYNLFGQ FRWISAQTNR ARNGELYRYI ADTHGAFVQP AFYEAFGLTV VEAMTCGLPT FATVHGGPAE
701: IIEHGISGFH IDPYHPDQAA NLIADFFEQC KQDPNHWVEV SNRGLQRIYE KYTWKIYSER LMTLAGVYGF WKYVSKLERR ETRRYLEMFY ILKFRELAKT
801: VPLAVDEAH

Best Arabidopsis Sequence Match ( AT4G02280.1 )
(BLAST)

001: MANPKLTRVL STRDRVQDTL SAHRNELVAL LSRYVDQGKG ILQPHNLIDE LESVIGDDET KKSLSDGPFG EILKSAMEAI VVPPFVALAV RPRPGVWEYV
101: RVNVFELSVE QLTVSEYLRF KEELVDGPNS DPFCLELDFE PFNANVPRPS RSSSIGNGVQ FLNRHLSSVM FRNKDCLEPL LDFLRVHKYK GHPLMLNDRI
201: QSISRLQIQL SKAEDHISKL SQETPFSEFE YALQGMGFEK GWGDTAGRVL EMMHLLSDIL QAPDPSSLEK FLGMVPMVFN VVILSPHGYF GQANVLGLPD
301: TGGQVVYILD QVRALETEML LRIKRQGLDI SPSILIVTRL IPDAKGTTCN QRLERVSGTE HTHILRVPFR SEKGILRKWI SRFDVWPYLE NYAQDAASEI
401: VGELQGVPDF IIGNYSDGNL VASLMAHRMG VTQCTIAHAL EKTKYPDSDI YWKDFDNKYH FSCQFTADLI AMNNADFIIT STYQEIAGTK NTVGQYESHG
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM TIYFPYSEET RRLTALHGSI EEMLYSPDQT DEHVGTLSDR SKPILFSMAR LDKVKNISGL VEMYSKNTKL
601: RELVNLVVIA GNIDVNKSKD REEIVEIEKM HNLMKNYKLD GQFRWITAQT NRARNGELYR YIADTRGAFA QPAFYEAFGL TVVEAMTCGL PTFATCHGGP
701: AEIIEHGLSG FHIDPYHPEQ AGNIMADFFE RCKEDPNHWK KVSDAGLQRI YERYTWKIYS ERLMTLAGVY GFWKYVSKLE RRETRRYLEM FYILKFRDLV
801: KTVPSTADD

Arabidopsis Description

SUS3Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6L8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.