Factsheet for Zm00001d029091_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010801_P001
Zm00001d029087_P002
Zm00001d029091_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	Zm00001d010801_P001	AT4G02280.1	21798944
AT4G02280.1	Zm00001d029087_P002	AT4G02280.1	21798944
AT4G02280.1	Zm00001d029091_P003	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92301	Sorghum	cytosol	95.15	96.91
Zm00001d029087_P002	Maize	cytosol	97.82	94.94
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	92.35	94.07
VIT_12s0057g00130.t01	Wine grape	cytosol	17.84	83.05
VIT_00s1562g00010.t01	Wine grape	cytosol	17.72	82.49
GSMUA_Achr8P22470_001	Banana	cytosol	80.83	82.32
VIT_07s0005g00750.t01	Wine grape	cytosol	80.34	81.63
GSMUA_Achr3P08190_001	Banana	cytosol	61.53	81.25
GSMUA_Achr3P08200_001	Banana	mitochondrion	17.72	80.66
AT4G02280.1	Thale cress	mitochondrion	78.03	79.48
CDY22042	Canola	cytosol, mitochondrion	78.16	79.41
Bra036282.1-P	Field mustard	cytosol, mitochondrion	78.16	79.41
VIT_05s0077g01930.t01	Wine grape	cytosol	77.79	79.33
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	77.91	79.06
CDY52781	Canola	mitochondrion	77.79	79.04
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	77.79	78.94
Solyc09g098590.2.1	Tomato	cytosol	77.67	78.82
PGSC0003DMT400017087	Potato	cytosol	77.18	78.42
Zm00001d010801_P001	Maize	cytosol	22.94	77.14
VIT_10s0071g00070.t01	Wine grape	cytosol	7.52	76.54
KRH12090	Soybean	endoplasmic reticulum	73.42	75.44
CDX86250	Canola	cytosol	70.75	73.98
CDX85398	Canola	cytosol	72.33	73.85
AT5G49190.1	Thale cress	cytosol	72.09	73.61
Bra037432.1-P	Field mustard	cytosol	72.09	73.61
Zm00001d047253_P003	Maize	cytosol	68.69	69.36
Zm00001d045042_P014	Maize	cytosol, mitochondrion	68.69	68.86
VIT_10s0071g00080.t01	Wine grape	cytosol	5.95	63.64
Zm00001d051837_P002	Maize	cytosol	52.91	51.23
CDX87785	Canola	cytosol	9.83	50.31
Zm00001d014119_P001	Maize	cytosol	7.04	37.91
Zm00001d050151_P001	Maize	cytosol	6.19	37.23
CDY46981	Canola	cytosol, nucleus, plastid	14.2	34.11
Zm00001d015570_P002	Maize	cytosol	19.66	16.8
Zm00001d012036_P001	Maize	nucleus	21.48	16.57
Zm00001d042353_P003	Maize	nucleus	21.24	16.22
Zm00001d036749_P001	Maize	cytosol	18.69	15.79
Zm00001d050125_P002	Maize	nucleus	20.15	15.68
Zm00001d046595_P002	Maize	cytosol	17.6	14.83
Zm00001d016399_P002	Maize	extracellular	2.79	14.65
Zm00001d048979_P001	Maize	cytosol	16.63	13.42

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	UniProt:A0A1D6K2G3
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_1
ProteinID:ONL97887.1	PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF509	SUPFAM:SSF53756
InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI00084547FD	EnsemblPlantsGene:Zm00001d029091	EnsemblPlants:Zm00001d029091_P003
EnsemblPlants:Zm00001d029091_T003	:	:	:	:	:

Description

sucrose synthase2sucrose synthase2

Coordinates

chr1:-:57485976..57493258

Molecular Weight (calculated)

93887.7 Da

IEP (calculated)

6.703

GRAVY (calculated)

-0.225

Length

824 amino acids

Sequence
(BLAST)

001: MSAPKLDRNP SIRDRVEDTL HAHRNELVAL LSKYVNKGKG ILQPHHILDA LDEVQGSGGR ALAEGPFLDV LRSAQEAIVL PPFVAIAVRP RPGVWEYVRV
101: NVHELSVEQL TVSEYLRFKE ELVDGQHNDP YVLELDFEPF NVSVPRPNRS SSIGNGVQFL NRHLSSIMFR NRDCLEPLLD FLRGHRHKGH VMMLNDRIQS
201: LGRLQSVLTK AEEHLSKLPA DTPYSQFAYN FNTYICFFFL LVTFRFQEWG LEKGWGDTAG HVLEMIHLLL DIIQAPDPST LEKFLGRIPM IFNVVVVSPH
301: GYFGQANVLG LPDTGGQIVY ILDQVRALEN EMVLRLKKQG LDVSPKILIV TRLIPDAKGT SCNQRLERIS GTQHTYILRV PFRNENGILK KWISRFDVWP
401: YLETFAEDAA GEIAAELQGT PDFIIGNYSD GNLVASLLSY KMGITQCNIA HALEKTKYPD SDIFWKNFDE KYHFSCQFTA DIIAMNNADF IITSTYQEIA
501: GSKNTVGQYE SHTAFTLPGL YRVVHGIDVF DPKFNIVSPG ADMSIYFPHT EKAKRLTSLH GSIENLIYDP EQNDEHIGHL DDRSKPILFS MARLDRVKNI
601: TGLVEAFAKC AKLRELVNLV VVAGYNDVNK SKDREEIAEI EKMHELIKTH NLFGQFRWIS AQTNRARNGE LYRYIADTHG AFVQPAFYEA FGLTVVEAMT
701: CGLPTFATLH GGPAEIIEHG VSGFHIDPYH PEQAANLMAD FFDRCKQDPD HWVKISGAGL QRIYEKYTWK IYSERLMTLA GVYGFWKYVS KLERRETRRY
801: LEMFYILKFR ELAKTVPLAI DQPQ

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.