Factsheet for VIT_07s0005g00750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g00750.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	VIT_07s0005g00750.t01	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g00130.t01	Wine grape	cytosol	18.5	84.75
VIT_00s1562g00010.t01	Wine grape	cytosol	18.37	84.18
GSMUA_Achr8P22470_001	Banana	cytosol	83.72	83.93
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	83.85	83.74
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	83.48	83.37
GSMUA_Achr3P08190_001	Banana	cytosol	63.38	82.37
AT4G02280.1	Thale cress	mitochondrion	82.12	82.32
PGSC0003DMT400017087	Potato	cytosol	82.24	82.24
VIT_05s0077g01930.t01	Wine grape	cytosol	81.75	82.05
Solyc09g098590.2.1	Tomato	cytosol	82.12	82.02
Bra036282.1-P	Field mustard	cytosol, mitochondrion	81.75	81.75
CDY22042	Canola	cytosol, mitochondrion	81.75	81.75
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	81.38	81.58
VIT_10s0071g00070.t01	Wine grape	cytosol	8.14	81.48
CDY52781	Canola	mitochondrion	81.38	81.38
TraesCS4D01G169800.1	Wheat	cytosol	81.01	81.21
EER92301	Sorghum	cytosol	80.89	81.09
TraesCS4A01G140000.1	Wheat	cytosol, golgi, unclear	80.52	80.72
GSMUA_Achr3P08200_001	Banana	mitochondrion	18.0	80.66
HORVU4Hr1G049500.3	Barley	cytosol	80.52	80.62
Zm00001d029091_P003	Maize	cytosol	81.63	80.34
TraesCS4B01G167500.1	Wheat	cytosol	80.02	80.22
Zm00001d029087_P002	Maize	cytosol	81.63	77.97
VIT_11s0016g00470.t01	Wine grape	cytosol	71.64	71.29
Zm00001d010801_P001	Maize	cytosol	20.47	67.76
VIT_10s0071g00080.t01	Wine grape	cytosol	6.04	63.64
CDX87785	Canola	cytosol	11.1	55.9
VIT_04s0079g00230.t01	Wine grape	cytosol	55.98	53.6
VIT_17s0053g00700.t01	Wine grape	cytosol	56.1	50.22
CDY46981	Canola	cytosol, nucleus, plastid	16.03	37.9
VIT_18s0075g00350.t01	Wine grape	cytosol	5.18	29.58
VIT_11s0118g00200.t01	Wine grape	cytosol	21.7	16.73
VIT_04s0008g05730.t01	Wine grape	cytosol	21.09	16.16
VIT_05s0029g01140.t01	Wine grape	cytosol	21.21	16.12
VIT_18s0089g00410.t01	Wine grape	cytosol	19.24	15.23
VIT_18s0075g00340.t01	Wine grape	plastid	0.86	3.57

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	EntrezGene:100267606	wikigene:100267606	MapMan:3.1.4.2	Gene3D:3.10.450.330
Gene3D:3.40.50.2000	UniProt:A5C6H7	EMBL:AM483991	ProteinID:CAN68704	ProteinID:CAN68704.1	ProteinID:CBI36885
ProteinID:CBI36885.3	ncoils:Coil	EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740
GO:GO:0016757	InterPro:Glyco_trans_1	EntrezGene:LOC100267606	wikigene:LOC100267606	PFAM:PF00534	PFAM:PF00862
PANTHER:PTHR12526	PANTHER:PTHR12526:SF509	SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGR:TC62599
TIGRFAMs:TIGR02470	UniParc:UPI0001522989	ArrayExpress:VIT_07s0005g00750	EnsemblPlantsGene:VIT_07s0005g00750	EnsemblPlants:VIT_07s0005g00750.t01	unigene:Vvi.8859
RefSeq:XP_002271896	RefSeq:XP_002271896.1	:	:	:	:

Description

Sucrose synthase [Source:UniProtKB/TrEMBL;Acc:A5C6H7]

Coordinates

chr7:-:3381056..3389507

Molecular Weight (calculated)

92487.8 Da

IEP (calculated)

6.023

GRAVY (calculated)

-0.254

Length

811 amino acids

Sequence
(BLAST)

001: MVTPKLGRSP SIRDRVEDTL SAHRNELVAL LSRYVAQGNG ILQPHHLIDE LDNIVGDDVG RQKLSDGPFG QILKSTQEAI ILPPFVAIAV RPRPGVWEYV
101: RVNVHELSVD QLSVSEYLRF KEELVDGMFN DYYVLELDFE PFNASFPRPN RSSSIGNGVQ FLNRHLSSIM FRNKESLEPL LDFLRVHKYK GQVIMLNDRI
201: QSISRLQSAL VKADDHLTKL PPETPFGEFE YEFQGMGFER GWGDTAQRVL EMIHLLLDIL QAPDPSTLET FLGRIPMVFN VVILSPHGYF GQANVLGLPD
301: TGGQVVYILD QVRALENEML LRMQKQGLDV TPRILIVTRL IPDAKGTTCN QRLERVSGTE HSHILRVPFR TDKGILRKWI SRFDVWPYLE TFAEDAASEI
401: AAELQGVPEL IIGNYSDGNL VASLLASKLG VTQCTIAHAL EKTKYPDSDI YWKNFDDKYH FSCQFTADLI AMNNADFIIT STYQEIAGSK NTVGQYESHT
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM CIYFPYSDVE KRLTALHGSI EKLLYDPEQN EEHIGMLNDR SKPIIFSMAR LDQVKNITGL VECYAKNAKL
601: REMANLVVVA GYNDVKKSND REEIVEIEKM HDLMKEYNLH GQFRWMSSQT NRARNGELYR YIADTRGIFV QPAFYEAFGL TVVEAMTCGL PTFATCHGGP
701: AEIIENGVSG FHIDPYHPDQ VATTMVDFFE KCKEDSSHWN KISDAGLQRI YERYTWKIYS ERLMTLAGVY GFWKYVSKLS RRETRRYLEM FYTLKFRDLA
801: KSVPLAIDDQ H

Best Arabidopsis Sequence Match ( AT4G02280.1 )
(BLAST)

001: MANPKLTRVL STRDRVQDTL SAHRNELVAL LSRYVDQGKG ILQPHNLIDE LESVIGDDET KKSLSDGPFG EILKSAMEAI VVPPFVALAV RPRPGVWEYV
101: RVNVFELSVE QLTVSEYLRF KEELVDGPNS DPFCLELDFE PFNANVPRPS RSSSIGNGVQ FLNRHLSSVM FRNKDCLEPL LDFLRVHKYK GHPLMLNDRI
201: QSISRLQIQL SKAEDHISKL SQETPFSEFE YALQGMGFEK GWGDTAGRVL EMMHLLSDIL QAPDPSSLEK FLGMVPMVFN VVILSPHGYF GQANVLGLPD
301: TGGQVVYILD QVRALETEML LRIKRQGLDI SPSILIVTRL IPDAKGTTCN QRLERVSGTE HTHILRVPFR SEKGILRKWI SRFDVWPYLE NYAQDAASEI
401: VGELQGVPDF IIGNYSDGNL VASLMAHRMG VTQCTIAHAL EKTKYPDSDI YWKDFDNKYH FSCQFTADLI AMNNADFIIT STYQEIAGTK NTVGQYESHG
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM TIYFPYSEET RRLTALHGSI EEMLYSPDQT DEHVGTLSDR SKPILFSMAR LDKVKNISGL VEMYSKNTKL
601: RELVNLVVIA GNIDVNKSKD REEIVEIEKM HNLMKNYKLD GQFRWITAQT NRARNGELYR YIADTRGAFA QPAFYEAFGL TVVEAMTCGL PTFATCHGGP
701: AEIIEHGLSG FHIDPYHPEQ AGNIMADFFE RCKEDPNHWK KVSDAGLQRI YERYTWKIYS ERLMTLAGVY GFWKYVSKLE RRETRRYLEM FYILKFRDLV
801: KTVPSTADD

Arabidopsis Description

SUS3Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6L8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.