Factsheet for VIT_12s0057g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1562g00010.t01	Wine grape	cytosol	99.44	99.44
VIT_10s0071g00070.t01	Wine grape	cytosol	44.07	96.3
VIT_10s0071g00080.t01	Wine grape	cytosol	23.73	54.55
Zm00001d010801_P001	Maize	cytosol	49.72	35.92
GSMUA_Achr3P08190_001	Banana	cytosol	86.44	24.52
VIT_05s0077g01930.t01	Wine grape	cytosol	93.79	20.54
GSMUA_Achr8P22470_001	Banana	cytosol	87.01	19.04
AT5G49190.1	Thale cress	cytosol	86.44	18.96
Bra037432.1-P	Field mustard	cytosol	85.31	18.71
KRH12090	Soybean	endoplasmic reticulum	84.75	18.7
VIT_07s0005g00750.t01	Wine grape	cytosol	84.75	18.5
CDX85398	Canola	cytosol	84.18	18.46
EER92301	Sorghum	cytosol	83.62	18.29
TraesCS4D01G169800.1	Wheat	cytosol	83.05	18.17
HORVU4Hr1G049500.3	Barley	cytosol	83.05	18.15
TraesCS4A01G140000.1	Wheat	cytosol, golgi, unclear	82.49	18.05
TraesCS4B01G167500.1	Wheat	cytosol	82.49	18.05
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	81.92	17.92
Zm00001d029091_P003	Maize	cytosol	83.05	17.84
Zm00001d029087_P002	Maize	cytosol	83.05	17.31
CDX86250	Canola	cytosol	75.71	17.01
VIT_11s0016g00470.t01	Wine grape	cytosol	74.01	16.07
VIT_04s0079g00230.t01	Wine grape	cytosol	66.1	13.81
VIT_17s0053g00700.t01	Wine grape	cytosol	60.45	11.81
VIT_05s0029g01140.t01	Wine grape	cytosol	21.47	3.56
VIT_11s0118g00200.t01	Wine grape	cytosol	19.77	3.33
VIT_18s0089g00410.t01	Wine grape	cytosol	18.64	3.22
VIT_04s0008g05730.t01	Wine grape	cytosol	18.08	3.02
VIT_18s0075g00350.t01	Wine grape	cytosol	0.56	0.7
VIT_18s0075g00340.t01	Wine grape	plastid	0.0	0.0
GSMUA_Achr3P08200_001	Banana	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.40.50.2000	MapMan:35.1	EMBL:AM440381	ProteinID:CAN71823	ProteinID:CAN71823.1	ProteinID:CCB51687
ProteinID:CCB51687.1	UniProt:F6HHJ1	EMBL:FN595759	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005985	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009247	GO:GO:0009536	GO:GO:0009941
GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0046506	GO:GO:0046510	PFAM:PF00862
PANTHER:PTHR12526	PANTHER:PTHR12526:SF509	SUPFAM:SSF53756	InterPro:Sucrose_synth	UniParc:UPI00021087B6	ArrayExpress:VIT_12s0057g00130
EnsemblPlantsGene:VIT_12s0057g00130	EnsemblPlants:VIT_12s0057g00130.t01	:	:	:	:

Description

No Description!

Coordinates

chr12:+:8810870..8811602

Molecular Weight (calculated)

19905.8 Da

IEP (calculated)

5.926

GRAVY (calculated)

-0.185

Length

177 amino acids

Sequence
(BLAST)

001: MLDQVRALEN EMLLKIQKQG LDVIPKILIV TRLIPDAKGT TRNQRLERIS EDVSNEIAAE LQGVPDLIIG NYSDGNLVAS LLSYKLGITQ CNIAHALEKT
101: KYPESDIYWR KFEDKYHFSS QFTADLIAMN NADSIITSTY QEIAGSKNHV GQYESHTAFT LLGLHRVVHG IDFLSQV

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.