CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92301

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	EER92301	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029091_P003	Maize	cytosol	96.91	95.15
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	93.82	93.82
Zm00001d029087_P002	Maize	cytosol	97.03	92.46
TraesCS4D01G169800.1	Wheat	cytosol	91.72	91.72
HORVU4Hr1G049500.3	Barley	cytosol	91.47	91.36
TraesCS4A01G140000.1	Wheat	cytosol, golgi, unclear	91.1	91.1
TraesCS4B01G167500.1	Wheat	cytosol	90.61	90.61
VIT_12s0057g00130.t01	Wine grape	cytosol	18.29	83.62
GSMUA_Achr8P22470_001	Banana	cytosol	83.31	83.31
VIT_00s1562g00010.t01	Wine grape	cytosol	18.17	83.05
GSMUA_Achr3P08190_001	Banana	cytosol	62.67	81.25
VIT_07s0005g00750.t01	Wine grape	cytosol	81.09	80.89
GSMUA_Achr3P08200_001	Banana	mitochondrion	18.05	80.66
VIT_05s0077g01930.t01	Wine grape	cytosol	79.6	79.7
AT4G02280.1	Thale cress	mitochondrion	79.48	79.48
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	79.73	79.43
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	79.6	79.31
CDY22042	Canola	cytosol, mitochondrion	79.48	79.28
Bra036282.1-P	Field mustard	cytosol, mitochondrion	79.48	79.28
VIT_10s0071g00070.t01	Wine grape	cytosol	7.91	79.01
CDY52781	Canola	mitochondrion	78.99	78.79
Solyc09g098590.2.1	Tomato	cytosol	78.86	78.57
PGSC0003DMT400017087	Potato	cytosol	78.37	78.18
KRH12090	Soybean	endoplasmic reticulum	74.41	75.06
CDX86250	Canola	cytosol	71.94	73.86
AT5G49190.1	Thale cress	cytosol	73.55	73.73
CDX85398	Canola	cytosol	73.55	73.73
Bra037432.1-P	Field mustard	cytosol	73.3	73.48
KXG19528	Sorghum	mitochondrion	69.59	70.2
OQU92441	Sorghum	cytosol	69.22	68.63
VIT_10s0071g00080.t01	Wine grape	cytosol	6.06	63.64
OQU77175	Sorghum	plastid	57.23	51.62
CDX87785	Canola	cytosol	10.14	50.93
KXG31429	Sorghum	cytosol	53.65	50.29
CDY46981	Canola	cytosol, nucleus, plastid	14.59	34.4
KXG29640	Sorghum	cytosol	20.02	16.8
EES04111	Sorghum	nucleus	21.88	16.37
KXG20466	Sorghum	cytosol	19.65	16.22
OQU78428	Sorghum	nucleus	21.14	15.98
KXG28137	Sorghum	cytosol	18.54	14.02

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	EntrezGene:8082319
UniProt:C5X0Q9	ncoils:Coil	EnsemblPlants:EER92301	ProteinID:EER92301	ProteinID:EER92301.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_1	PFAM:PF00534	PFAM:PF00862
PANTHER:PTHR12526	PANTHER:PTHR12526:SF509	MetaCyc:PWY-3801	EnsemblPlantsGene:SORBI_3001G378300	SUPFAM:SSF53756	unigene:Sbi.6938
InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI0001A82A28	RefSeq:XP_002465303.1	:

Description

hypothetical protein

Coordinates

chr1:+:66642503..66650446

Molecular Weight (calculated)

92290.8 Da

IEP (calculated)

6.844

GRAVY (calculated)

-0.263

Length

809 amino acids

Sequence
(BLAST)

001: MSAPKLDRNA SIRDRVEDTL HAHRNELVAL LSKYVNKGKG ILQPHHILDA LDEVQGSGVR ALAEGPFLDV LRSAQEAIVL PPFVAIAVRP RPGVWEYVRV
101: NVHELSVEQL TVSEYLRFKE DLVDGQHNDP YILELDFEPF NASVPRPNRS SSIGNGVQFL NRHLSSIMFR NRDCLEPLLD FLRGHRHKGH VMMLNDRVQS
201: LGRLQSVLTK AEEYLSKLPA ETPYAQFAYK FQEWGLEKGW GDTAEHVLEM VHLLLDIIQA PDPSTLEKFL GRIPMIFNVV VVSPHGYFGQ ANVLGLPDTG
301: GQIVYILDQV RALENEMVLR LKKQGLDFSP KILIVTRLIP DAKGTSCNQR LERISGTQHT YILRVPFRNE NGILKKWISR FDVWPYLETF AEDAAGEIAA
401: ELQGTPDFII GNYSDGNLVA SLLSYKMGIT QCNIAHALEK TKYPDSDIYW KKFDEKYHFS CQFTADIIAM NNADFIITST YQEIAGSKNT VGQYESHTAF
501: TLPGLYRVVH GIDVFDPKFN IVSPGADMSI YFPHTEKAKR LTSLHGSIEN LLYDPEQNDQ HIGHLDDRSK PILFSMARLD RVKNITGLVE AFAKCTKLRE
601: LVNLVVVAGY NDVKKSKDRE EIAEIEKMHE LIKTYNLFGQ FRWISAQTNR ARNGELYRYI ADTHGAFVQP AFYEAFGLTV VEAMTCGLPT FATLHGGPAE
701: IIEHGISGFH IDPYHPEQAA NLMADFFERC KQDPNHWVKI SEAGLKRIYE KYTWKIYSER LMTLAGVYGF WKYVSKLERR ETRRYLEMFY ILKFRELAKT
801: VPLAIDQPQ

Best Arabidopsis Sequence Match ( AT4G02280.1 )
(BLAST)

001: MANPKLTRVL STRDRVQDTL SAHRNELVAL LSRYVDQGKG ILQPHNLIDE LESVIGDDET KKSLSDGPFG EILKSAMEAI VVPPFVALAV RPRPGVWEYV
101: RVNVFELSVE QLTVSEYLRF KEELVDGPNS DPFCLELDFE PFNANVPRPS RSSSIGNGVQ FLNRHLSSVM FRNKDCLEPL LDFLRVHKYK GHPLMLNDRI
201: QSISRLQIQL SKAEDHISKL SQETPFSEFE YALQGMGFEK GWGDTAGRVL EMMHLLSDIL QAPDPSSLEK FLGMVPMVFN VVILSPHGYF GQANVLGLPD
301: TGGQVVYILD QVRALETEML LRIKRQGLDI SPSILIVTRL IPDAKGTTCN QRLERVSGTE HTHILRVPFR SEKGILRKWI SRFDVWPYLE NYAQDAASEI
401: VGELQGVPDF IIGNYSDGNL VASLMAHRMG VTQCTIAHAL EKTKYPDSDI YWKDFDNKYH FSCQFTADLI AMNNADFIIT STYQEIAGTK NTVGQYESHG
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM TIYFPYSEET RRLTALHGSI EEMLYSPDQT DEHVGTLSDR SKPILFSMAR LDKVKNISGL VEMYSKNTKL
601: RELVNLVVIA GNIDVNKSKD REEIVEIEKM HNLMKNYKLD GQFRWITAQT NRARNGELYR YIADTRGAFA QPAFYEAFGL TVVEAMTCGL PTFATCHGGP
701: AEIIEHGLSG FHIDPYHPEQ AGNIMADFFE RCKEDPNHWK KVSDAGLQRI YERYTWKIYS ERLMTLAGVY GFWKYVSKLE RRETRRYLEM FYILKFRDLV
801: KTVPSTADD

Arabidopsis Description

SUS3Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6L8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.