CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047253_P003	Maize	cytosol	99.14	99.14
Os03t0401300-01	Rice	extracellular	95.47	95.47
TraesCS7D01G036600.2	Wheat	golgi	94.36	94.48
TraesCS7A01G040900.2	Wheat	cytosol	94.36	94.48
TraesCS4A01G446700.1	Wheat	cytosol	94.36	94.48
HORVU7Hr1G007220.8	Barley	cytosol	94.36	94.48
HORVU0Hr1G019020.1	Barley	cytosol	16.91	92.62
HORVU5Hr1G050660.1	Barley	cytosol	4.41	90.0
GSMUA_Achr6P10890_001	Banana	unclear	84.44	84.54
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	84.07	84.07
GSMUA_Achr2P21870_001	Banana	cytosol	83.82	83.93
GSMUA_Achr3P01900_001	Banana	mitochondrion	82.6	82.6
KXG19528	Sorghum	mitochondrion	79.04	80.42
GSMUA_Achr7P19810_001	Banana	mitochondrion	80.27	80.27
KRH19379	Soybean	cytosol	75.61	76.65
KRH02557	Soybean	cytosol, endoplasmic reticulum, extracellular, mitochondrion	75.49	76.52
VIT_11s0016g00470.t01	Wine grape	cytosol	75.49	75.58
KRH12615	Soybean	endoplasmic reticulum	74.26	75.19
CDX88838	Canola	endoplasmic reticulum, golgi	68.26	74.97
PGSC0003DMT400007505	Potato	cytosol	73.77	74.78
Solyc12g009300.1.1	Tomato	nucleus	73.77	74.78
KRH37557	Soybean	endoplasmic reticulum	73.77	74.32
Solyc07g042550.2.1	Tomato	extracellular	73.04	74.04
AT3G43190.1	Thale cress	cytosol	73.28	74.01
Bra002332.1-P	Field mustard	cytosol	70.83	73.54
PGSC0003DMT400035262	Potato	cytosol	72.79	73.51
CDY16569	Canola	cytosol	72.3	73.29
CDX92432	Canola	cytosol	72.06	73.04
Bra006578.1-P	Field mustard	cytosol	71.81	72.7
CDX70945	Canola	cytosol	71.57	72.46
AT5G20830.1	Thale cress	cytosol	71.08	71.78
EER92301	Sorghum	cytosol	68.63	69.22
PGSC0003DMT400035264	Potato	cytosol	65.69	66.75
Solyc07g042520.2.1	Tomato	cytosol, extracellular	65.69	66.75
OQU77175	Sorghum	plastid	55.88	50.84
KXG31429	Sorghum	cytosol	50.74	47.97
KXG29640	Sorghum	cytosol	18.5	15.66
EES04111	Sorghum	nucleus	20.59	15.54
KXG20466	Sorghum	cytosol	18.63	15.51
OQU78428	Sorghum	nucleus	20.1	15.33
KXG28137	Sorghum	cytosol	18.26	13.93

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	EntrezGene:8077078
UniProt:C5WXJ1	ncoils:Coil	ProteinID:EER92159.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010037	GO:GO:0016157
GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_1	EnsemblPlants:OQU92441	ProteinID:OQU92441	ProteinID:OQU92441.1
PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF398	EnsemblPlantsGene:SORBI_3001G344500	SUPFAM:SSF53756
unigene:Sbi.14092	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI0001A82173	RefSeq:XP_002465161.1

Description

hypothetical protein

Coordinates

chr1:+:63320872..63327577

Molecular Weight (calculated)

92962.5 Da

IEP (calculated)

6.458

GRAVY (calculated)

-0.277

Length

816 amino acids

Sequence
(BLAST)

001: MGEAAGDRVL SRLHSVRERI GDSLSAHPNE LVAVFTRLKN LGKGMLQPHQ IIAEYNSAIP EAEREKLKDG AFEDVLRAAQ EAIVIPPWVA LAIRPRPGVW
101: EYVRVNVSEL AVEELRVPEY LQFKEQLVEE GPNNNFVLEL DFEPFNASFP RPSLSKSIGN GVQFLNRHLS SKLFHDKESM YPLLNFLRAH NYKGMTMMLN
201: DRIRSLSALQ GALRKAEEHL STLQADTPYS EFHHRFQELG LEKGWGDCAK RAQETIHLLL DLLEAPDPST LEKFLGTIPM VFNVVILSPH GYFAQANVLG
301: YPDTGGQVVY ILDQVRAMEN EMLLRIKQCG LDITPKILIV TRLLPDATGT TCGQRLEKVL GTEHCHILRV PFRTENGIVR KWISRFEVWP YLETYTDDVA
401: HEIAGELQAN PDLIIGNYSD GNLVACLLAH KMGVTHCTIA HALEKTKYPN SDLYWKKFED HYHFSCQFTT DLIAMNHADF IITSTFQEIA GNKDTVGQYE
501: SHMAFTMPGL YRVVHGIDVF DPKFNIVSPG ADLSIYFPYT ESHKRLTSLH PEIEELLYSQ TENTEHKFVL NDRNKPIIFS MARLDRVKNL TGLVELYGRN
601: KRLQELVNLV VVCGDHGNPS KDKEEQAEFK KMFDLIEQYN LNGHIRWISA QMNRVRNGEL YRYICDTKGA FVQPAFYEAF GLTVVEAMTC GLPTFATAYG
701: GPAEIIVHGV SGFHIDPYQG DKASALLVDF FEKCQTDSSH WNKISQGGLQ RIEEKYTWKL YSERLMTLTG VYGFWKYVSN LERRETRRYL EMLYALKYRT
801: MASTVPLAVE GEPSSK

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.