Factsheet for TraesCS7D01G036600.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G040900.2	Wheat	cytosol	99.63	99.63
TraesCS4A01G446700.1	Wheat	cytosol	99.63	99.63
HORVU0Hr1G019020.1	Barley	cytosol	18.16	99.33
HORVU7Hr1G007220.8	Barley	cytosol	99.14	99.14
Os03t0401300-01	Rice	extracellular	95.34	95.22
Zm00001d047253_P003	Maize	cytosol	94.48	94.36
OQU92441	Sorghum	cytosol	94.48	94.36
HORVU5Hr1G050660.1	Barley	cytosol	4.42	90.0
TraesCS2D01G175600.1	Wheat	golgi, unclear	90.43	88.58
GSMUA_Achr6P10890_001	Banana	unclear	83.19	83.19
GSMUA_Achr2P21870_001	Banana	cytosol	82.82	82.82
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	82.21	82.11
GSMUA_Achr3P01900_001	Banana	mitochondrion	82.21	82.11
GSMUA_Achr7P19810_001	Banana	mitochondrion	79.75	79.66
TraesCS7D01G159800.1	Wheat	mitochondrion	78.4	77.36
KRH19379	Soybean	cytosol	74.85	75.78
KRH02557	Soybean	cytosol, endoplasmic reticulum, extracellular, mitochondrion	74.72	75.65
CDX88838	Canola	endoplasmic reticulum, golgi	68.22	74.83
KRH12615	Soybean	endoplasmic reticulum	73.99	74.81
PGSC0003DMT400007505	Potato	cytosol	73.86	74.78
Solyc12g009300.1.1	Tomato	nucleus	73.86	74.78
VIT_11s0016g00470.t01	Wine grape	cytosol	74.48	74.48
Solyc07g042550.2.1	Tomato	extracellular	73.01	73.91
KRH37557	Soybean	endoplasmic reticulum	73.37	73.83
AT3G43190.1	Thale cress	cytosol	73.01	73.64
Bra002332.1-P	Field mustard	cytosol	70.55	73.16
PGSC0003DMT400035262	Potato	cytosol	72.39	73.02
CDY16569	Canola	cytosol	71.9	72.8
CDX92432	Canola	cytosol	71.66	72.55
Bra006578.1-P	Field mustard	cytosol	71.66	72.46
CDX70945	Canola	cytosol	71.17	71.96
AT5G20830.1	Thale cress	cytosol	70.55	71.16
TraesCS4D01G169800.1	Wheat	cytosol	68.34	68.85
Solyc07g042520.2.1	Tomato	cytosol, extracellular	65.15	66.13
PGSC0003DMT400035264	Potato	cytosol	65.03	66.0
TraesCS7D01G552800.1	Wheat	cytosol	54.97	52.03
TraesCS2D01G403600.1	Wheat	cytosol	54.6	51.39
TraesCS6D01G403800.1	Wheat	cytosol	52.88	49.71
TraesCS7D01G508100.1	Wheat	cytosol	18.9	15.86
TraesCS3D01G013000.1	Wheat	nucleus	20.37	15.53
TraesCS3D01G420300.1	Wheat	nucleus	20.37	15.5
TraesCS6D01G133800.1	Wheat	cytosol	18.28	15.46
TraesCS4D01G088200.1	Wheat	cytosol, golgi, unclear	19.39	14.98

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016157	GO:GO:0016740	InterPro:Glyco_trans_1	PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526
PANTHER:PTHR12526:SF398	SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	EnsemblPlantsGene:TraesCS7D01G036600
EnsemblPlants:TraesCS7D01G036600.2	TIGR:cd03800	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:+:18679580..18683740

Molecular Weight (calculated)

92685.1 Da

IEP (calculated)

6.219

GRAVY (calculated)

-0.259

Length

815 amino acids

Sequence
(BLAST)

001: MGEAAGDRVL SRLHSVRERI GDSLSAHPNE LVAVFTRLVN LGNGMLQSHQ IIAEYNTAIP EAEREKLKDG AFEDVLRAAQ EAIVISPWVA LAIRPRPGVW
101: EYVRVNVSEL AVEELSVPEY LQFKEQLVEG SNKDFVLELD FEPFNASFPR PSLSKSIGNG VQFLNRHLSS KLFHDKESMY PLLNFLRAHN YKGMTMMLND
201: RIRSLSALQG ALRKAEEHLS GLPADTPYSD FHHRFQELGL EKGWGDCAKR AQETLHLLLD LLEAPDPSTL EKFLGTIPMV FNVVILSPHG YFAQANVLGY
301: PDTGGQVVYI LDQVRAMENE MLLRIKQQGL DITPRILIVT RLLPDATGTT CGQRLEKVLG TEHTHILRVP FRTESGIVRK WISRFEVWPY LETFTEDVAH
401: EISGELQANP DLIIGNYSDG NLVACLLAHK MGVTHCTIAH ALEKTKYPNS DLYWKKFEDH YHFSCQFTTD LIAMNHADFI ITSTFQEIAG NKDTVGQYES
501: HMAFTMPGMY RVVHGIDVFD PKFNIVSPGA DMSIYFPYSE SQRRLTSLHP EIEELLYSDV DNNEHKYVLK DRNKPIIFSM ARLDRVKNLT GLVELYGKNP
601: RLQELVNLVV VCGDHGNPSK DKEEQAEFKK MFDLIEQYNL NGHVRWISAQ MNRVRNAELY RYICDTKGAF VQPAFYEAFG LTVIEAMTCG LPTFATAYGG
701: PAEIIVNGVS GYHIDPYQGD KASTLLVEFF EKCQVDPSHW TKISQGGLQR IEEKYTWKLY SERLMTLTGV YGFWKYVSNL ERRETRRYLE MLYALKYRTM
801: ASTVPLAVEG ESASK

Best Arabidopsis Sequence Match ( AT3G43190.1 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.