Factsheet for Solyc07g042520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035264	Potato	cytosol	98.38	98.38
HORVU0Hr1G019020.1	Barley	cytosol	15.44	83.22
CDX88838	Canola	endoplasmic reticulum, golgi	68.12	73.62
Solyc07g042550.2.1	Tomato	extracellular	72.98	72.8
Solyc12g009300.1.1	Tomato	nucleus	72.35	72.17
Bra002332.1-P	Field mustard	cytosol	70.49	72.01
KRH19379	Soybean	cytosol	71.61	71.43
KRH02557	Soybean	cytosol, endoplasmic reticulum, extracellular, mitochondrion	71.36	71.18
CDY16569	Canola	cytosol	71.11	70.93
KRH12615	Soybean	endoplasmic reticulum	70.98	70.72
CDX92432	Canola	cytosol	70.86	70.68
Bra006578.1-P	Field mustard	cytosol	70.49	70.22
VIT_11s0016g00470.t01	Wine grape	cytosol	71.11	70.06
CDX70945	Canola	cytosol	70.11	69.85
AT5G20830.1	Thale cress	cytosol	69.99	69.55
AT3G43190.1	Thale cress	cytosol	69.86	69.43
KRH37557	Soybean	endoplasmic reticulum	69.86	69.26
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	68.12	67.03
GSMUA_Achr6P10890_001	Banana	unclear	67.87	66.87
GSMUA_Achr3P01900_001	Banana	mitochondrion	67.87	66.79
GSMUA_Achr7P19810_001	Banana	mitochondrion	67.25	66.18
Os07t0616800-01	Rice	cytosol	67.12	66.05
GSMUA_Achr2P21870_001	Banana	cytosol	66.75	65.77
KXG19528	Sorghum	mitochondrion	65.63	65.71
Os03t0401300-01	Rice	extracellular	66.75	65.69
OQU92441	Sorghum	cytosol	66.75	65.69
Zm00001d047253_P003	Maize	cytosol	66.5	65.44
HORVU7Hr1G007220.8	Barley	cytosol	66.25	65.28
TraesCS7D01G036600.2	Wheat	golgi	66.13	65.15
TraesCS7A01G040900.2	Wheat	cytosol	66.13	65.15
TraesCS4A01G446700.1	Wheat	cytosol	66.13	65.15
HORVU7Hr1G033230.2	Barley	mitochondrion	65.63	65.14
TraesCS7A01G158900.1	Wheat	golgi, nucleus	65.5	65.1
HORVU2Hr1G030870.1	Barley	plasma membrane	65.63	64.58
Os06t0194900-03	Rice	extracellular	64.88	64.48
Zm00001d045042_P014	Maize	cytosol, mitochondrion	65.63	64.11
TraesCS2B01G194200.1	Wheat	golgi	66.0	63.78
TraesCS2A01G168200.1	Wheat	golgi, unclear	66.0	63.78
TraesCS2D01G175600.1	Wheat	golgi, unclear	65.88	63.58
TraesCS7B01G063400.1	Wheat	mitochondrion	64.88	63.08
TraesCS7D01G159800.1	Wheat	mitochondrion	64.88	63.08
Solyc09g098590.2.1	Tomato	cytosol	62.76	62.07
HORVU5Hr1G050660.1	Barley	cytosol	2.62	52.5
Solyc02g081300.2.1	Tomato	cytosol, nucleus	53.8	48.87
Solyc03g098290.2.1	Tomato	cytosol, nucleus	53.55	48.26
Solyc08g042000.2.1	Tomato	nucleus	18.93	14.55
Solyc09g092130.2.1	Tomato	nucleus, unclear	18.93	14.29
Solyc07g007790.2.1	Tomato	cytosol	18.68	14.23
Solyc11g045110.1.1	Tomato	cytosol	17.56	14.1

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_1	UniProt:K4CEB3	PFAM:PF00534
PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF391	SUPFAM:SSF53756	EnsemblPlantsGene:Solyc07g042520.2	EnsemblPlants:Solyc07g042520.2.1
InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI000276BFF6	SEG:seg	:

Description

Sucrose synthase [Source:UniProtKB/TrEMBL;Acc:K4CEB3]

Coordinates

chr7:-:55816657..55820439

Molecular Weight (calculated)

91631.1 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.298

Length

803 amino acids

Sequence
(BLAST)

001: MAASGLSIKE RLEEAILARP DEISALKSRI ESEGKGVMKP LDLLNHLISV NSKKNGVNVG NSALVEILSY SQEAIVVPPQ LALAVRPRPG VWEYLSLNLK
101: QQKVAELTIP EYLQLKENVF DESGNILEMD FEPFTTVTPT KTLSDSIGNG LEFLNRHIAS TMFHDKEIAK CLLDFLRQHN YKGKSLMVKE SIQSLESFQF
201: VLKKAEEYLC TLSSETPYSD FESKFEEIGL ERGWGNTAER VQETIRHLLH LLEAPNASSL ENFLGRIPLV FNVVILTPHG YFAQENVLGY PDTGGQVVYI
301: LDQVPAMETE MLLRLKHQGL DDIVPRILVV TRLLPDAVGT TCGERMEKVY GAEHSHIIRV PFRTEKGMLR KWISRFEVWP YMETFTEDVA EELVKELQAK
401: PDLIIGNYSE GNLAASLLAK KFGATQCTIA HALEKTKYPN SDLYWKKFDD KYHFSSQFTA DLYAMNHTDF IITSTFQEIA GSKNTVGQYE SHTAFTMPGL
501: YRVVHGIDSF DPKFNIVSPG ADMSIYFPYT EKEKRLTKFH PEIEELLYSP VENKEHLCVL KDRSKPILFT MARLDRVKNL TGLVEWYAKN ARLRELVNLV
601: VVGGDRRKES KDLEEQAEMK KMYDLIETYN LNGQFRWISS QMNRVRNGEL YRYIADTRGA FVQPAFYEAF GLTVVESMTC GLPTFATCNG GPFEIIVHGK
701: SGFHIDPNQG DKATDLLVKF FEKSKEDPSY WENISKGGLQ RIIEKYTWQI YSQKVMTLSG IYGFWKFATK NDKVASAKKR YLEMFYELMF KKSAEKVPLA
801: IDE

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.