Factsheet for Solyc03g098290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079728	Potato	cytosol	19.42	98.3
TraesCS4A01G492600.1	Wheat	cytosol	44.44	70.71
VIT_17s0053g00700.t01	Wine grape	cytosol	71.27	70.09
GSMUA_Achr9P21240_001	Banana	cytosol	65.77	69.43
Solyc02g081300.2.1	Tomato	cytosol, nucleus	68.69	69.23
GSMUA_Achr3P13980_001	Banana	cytosol	63.19	66.71
Os04t0249500-00	Rice	cytosol	62.74	66.23
Os04t0309600-01	Rice	cytosol, plasma membrane	62.51	66.0
TraesCS2A01G406700.1	Wheat	cytosol	63.86	65.86
TraesCS2B01G424300.1	Wheat	cytosol	63.75	65.74
TraesCS2D01G403600.1	Wheat	cytosol	63.86	65.7
Os02t0831500-01	Rice	plastid	62.29	65.6
TraesCS7D01G552800.1	Wheat	cytosol	62.85	65.04
KRH38924	Soybean	plastid	67.12	64.93
TraesCS7B01G482200.1	Wheat	cytosol	62.74	64.92
HORVU6Hr1G094880.6	Barley	cytosol	62.74	64.92
KRH09470	Soybean	cytosol, plastid	67.0	64.89
TraesCS7A01G557600.1	Wheat	cytosol	62.63	64.81
HORVU7Hr1G120520.1	Barley	cytosol	62.63	64.66
TraesCSU01G082000.1	Wheat	plastid	62.4	64.06
OQU77175	Sorghum	plastid	64.31	63.88
TraesCS6D01G403800.1	Wheat	cytosol	62.07	63.78
TraesCS6B01G466600.1	Wheat	cytosol	61.73	63.36
Zm00001d051837_P002	Maize	cytosol	58.02	60.75
KXG31429	Sorghum	cytosol	58.47	60.37
Solyc09g098590.2.1	Tomato	cytosol	50.84	55.79
Solyc12g009300.1.1	Tomato	nucleus	49.72	55.03
Solyc07g042550.2.1	Tomato	extracellular	49.49	54.78
Zm00001d014119_P001	Maize	cytosol	9.2	53.59
Solyc07g042520.2.1	Tomato	cytosol, extracellular	48.26	53.55
Zm00001d050151_P001	Maize	cytosol	8.19	53.28
Solyc11g045110.1.1	Tomato	cytosol	18.63	16.6
Solyc08g042000.2.1	Tomato	nucleus	18.86	16.08
Solyc07g007790.2.1	Tomato	cytosol	18.74	15.84
Solyc09g092130.2.1	Tomato	nucleus, unclear	18.74	15.7

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_1	UniProt:K4BJP4
PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF296	SUPFAM:SSF53756	EnsemblPlantsGene:Solyc03g098290.2
EnsemblPlants:Solyc03g098290.2.1	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI000276877F	SEG:seg

Description

Sucrose synthase 6 [Source:Projected from Arabidopsis thaliana (AT1G73370) UniProtKB/Swiss-Prot;Acc:Q9FX32]

Coordinates

chr3:+:60636360..60640569

Molecular Weight (calculated)

100756.0 Da

IEP (calculated)

6.093

GRAVY (calculated)

-0.296

Length

891 amino acids

Sequence
(BLAST)

001: MATTPVADSM PDALKQSRYH MKRCFARFIA TGSRLMKLKY LMEDIENTIE DKAERTKVLE GSLGQTLSST QEAAVVPPYV AFAVRHNPGC WDYVKVNADN
101: LSVEAISPKE YLKFKEMIFD EEWAKDDNAL EVDFGAFDYS NPRLALSSSV GNGLNFVSKV MSSKLGGKPE EAQPLLDYLL ALNHQGENLM INENLNSVSK
201: LQAALIVAEV FVSSFSKDTP YKNFEHKLKE WGFEKGWGDS AGRVRETMRL ASEILQAPDP INMESFFSRL PTTFNIVIFS IHGYFGQADV LGLPDTGGQV
301: VYILDQVRAL EEEMLSRIKQ QGLNMKPKIL VVTRLIPDAR GTTCNQELEP ILNSSHSHIL RIPFRTEKGV LRQWVSRFDI YPYLENYAKD ATVKILELME
401: GKPDLIIGNY TDGNLVASLL ANKLGVTQGT IAHALEKTKY EDSDVKLKEF DPKYHFSCQF TADLLAMNAA DFIITSTYQE IAGSETRPGQ YESHTAFTMP
501: GLYRVVSGIN VFDPKFNIAS PGAEQSAYFP FTERKKRFVK FGPAIEELLY SKEENNEHIG FLADRRRPII FSMARFDSVK NLTGLTEWFG KNKKLQNLVN
601: LVIVGGFFDP SKSKDREEAA EIKKMHELIE KYNLKGQMRW IAAQTDKYRN SELYRTIADT KGAFVQPALY EAFGLTVIEA MNCGLPTFAT NQGGPAEIIV
701: DGVSGFHIDP YNGDESSNKI ADFFEKCQVD SIYWNRISEG GLKRIEECYT WKIYANKVLN MGSIYGFWRR FNVGQKQAKQ RYFEMFYNPL FRKLANNVPI
801: PYEEPLPVAP LDTIPSQEQK LPVPVPTAVA ELPTLPTIAF QRTEQKEEEK QVDTTTTSTT EIAKQATHWI CLCVSASIIV YAMVKLYRIV E

Best Arabidopsis Sequence Match ( AT1G73370.1 )
(BLAST)

001: MSSSSQAMLQ KSDSIAEKMP DALKQSRYHM KRCFASFVGG GKKLMKREHL MNEIEKCIED SRERSKILEG LFGYILTCTQ EAAVVPPFVA LAARPNPGFW
101: EYVKVNSGDL TVDEITATDY LKLKESVFDE SWSKDENALE IDFGAIDFTS PRLSLSSSIG KGADYISKFI SSKLGGKSDK LEPLLNYLLR LNHHGENLMI
201: NDDLNTVAKL QKSLMLAVIV VSTYSKHTPY ETFAQRLKEM GFEKGWGDTA ERVKETMIIL SEVLEAPDNG KLDLLFSRLP TVFNVVIFSV HGYFGQQDVL
301: GLPDTGGQVV YILDQVRALE EELLIRINQQ GLGFKPQILV VTRLIPEARG TKCDQELEAI EGTKHSHILR VPFVTNKGVL RQWVSRFDIY PYLERFTQDA
401: TSKILQRLDC KPDLIIGNYT DGNLVASLMA TKLGVTQGTI AHALEKTKYE DSDAKWKELD PKYHFSCQFT ADLIAMNVTD FIITSTYQEI AGSKDRPGQY
501: ESHTAFTMPG LCRVVSGIDV FDPKFNIAAP GADQSVYFPY TEKDKRFTKF HPSIQELLYN EKDNAEHMGY LADREKPIIF SMARLDTVKN ITGLVEWYGK
601: DKRLREMANL VVVAGFFDMS KSNDREEKAE IKKMHDLIEK YKLKGKFRWI AAQTDRYRNS ELYRCIADTK GVFVQPALYE AFGLTVIEAM NCGLPTFATN
701: QGGPAEIIVD GVSGFHIDPN NGDESVTKIG DFFSKCRSDG LYWDNISKGG LKRIYECYTW KIYAEKLLKM GSLYGFWRQV NEDQKKAKKR YIEMLYNLQF
801: KQLTKKVTIP EDKPLPLRLA SLRNLLPKKT TNLGAGSKQK EVTETEKTKQ KSKDGQEQHD VKVGEREVRE GLLAADASER VKKVLESSEE KQKLEKMKIA
901: YGQQHSQGAS PVRNLFWSVV VCLYICYILK QRFFGANSAQ EY

Arabidopsis Description

SUS6Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3K7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.