Subcellular Localization
min:
: max
Winner_takes_all: unclear, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| unclear:
26455813
|
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400067951 | Potato | nucleus | 98.68 | 98.68 |
| VIT_05s0029g01140.t01 | Wine grape | cytosol | 80.36 | 80.13 |
| KRH46034 | Soybean | cytosol | 76.69 | 77.35 |
| KRG98934 | Soybean | cytosol | 76.22 | 77.02 |
| KRH14493 | Soybean | cytosol | 76.03 | 76.11 |
| AT1G04920.1 | Thale cress | cytosol | 75.85 | 75.99 |
| Bra015364.1-P | Field mustard | cytosol | 59.96 | 74.71 |
| CDY18270 | Canola | cytosol | 74.25 | 74.18 |
| CDX89776 | Canola | cytosol | 74.15 | 74.15 |
| GSMUA_Achr4P16070_001 | Banana | nucleus | 74.72 | 73.47 |
| Zm00001d012036_P001 | Maize | nucleus | 69.36 | 69.1 |
| EES04111 | Sorghum | nucleus | 69.74 | 68.64 |
| Os01t0919400-01 | Rice | plasma membrane | 69.64 | 68.36 |
| Zm00001d042353_P003 | Maize | nucleus | 69.08 | 68.12 |
| TraesCS3B01G461800.1 | Wheat | nucleus | 68.23 | 67.91 |
| TraesCS3D01G420300.1 | Wheat | nucleus | 67.76 | 67.32 |
| TraesCS3A01G425500.1 | Wheat | nucleus | 67.86 | 67.23 |
| HORVU3Hr1G093830.2 | Barley | cytosol, nucleus | 62.03 | 66.47 |
| Solyc11g045110.1.1 | Tomato | cytosol | 54.23 | 57.7 |
| Solyc08g042000.2.1 | Tomato | nucleus | 56.2 | 57.22 |
| Solyc07g007790.2.1 | Tomato | cytosol | 56.2 | 56.74 |
| TraesCS4D01G088200.1 | Wheat | cytosol, golgi, unclear | 53.29 | 53.74 |
| TraesCS4B01G091100.1 | Wheat | cytosol | 53.29 | 53.49 |
| HORVU4Hr1G015570.3 | Barley | cytosol | 52.91 | 53.31 |
| TraesCS4A01G225100.1 | Wheat | cytosol | 52.91 | 53.21 |
| KXG28137 | Sorghum | cytosol | 52.26 | 51.96 |
| Zm00001d048979_P001 | Maize | cytosol | 48.5 | 50.54 |
| Os11t0236100-01 | Rice | cytosol, plasma membrane | 21.8 | 45.58 |
| Solyc09g098590.2.1 | Tomato | cytosol | 15.13 | 19.83 |
| Solyc07g042550.2.1 | Tomato | extracellular | 14.94 | 19.75 |
| Solyc12g009300.1.1 | Tomato | nucleus | 14.94 | 19.75 |
| Solyc07g042520.2.1 | Tomato | cytosol, extracellular | 14.29 | 18.93 |
| Solyc02g081300.2.1 | Tomato | cytosol, nucleus | 15.6 | 18.78 |
| Solyc03g098290.2.1 | Tomato | cytosol, nucleus | 15.7 | 18.74 |
Protein Annotations
| KEGG:00500+2.4.1.14 | MapMan:3.1.2.7 | Gene3D:3.40.50.2000 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005975 | GO:GO:0005985 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016157 |
| GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016757 | GO:GO:0046524 | GO:GO:0047947 | InterPro:Glyco_trans_1 |
| UniProt:H9BYP6 | EMBL:JQ086766 | PFAM:PF00534 | PFAM:PF00862 | PFAM:PF05116 | PANTHER:PTHR12526 |
| PANTHER:PTHR12526:SF360 | InterPro:SPP_N | InterPro:SPS_C | SUPFAM:SSF53756 | EnsemblPlantsGene:Solyc09g092130.2 | EnsemblPlants:Solyc09g092130.2.1 |
| InterPro:Sucrose_synth | InterPro:SucrsPsyn_pln | TIGRFAMs:TIGR02468 | UniParc:UPI0002571AC1 | SEG:seg | : |
Description
Sucrose-phosphate synthase B [Source:UniProtKB/TrEMBL;Acc:H9BYP6]
Coordinates
chr9:-:71269146..71277256
Molecular Weight (calculated)
119601.0 Da
IEP (calculated)
6.523
GRAVY (calculated)
-0.477
Length
1064 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGNEWINGY LEAILSSGAS AIEDKKPSST TTSSHLNLAE RANFNPTKYF VEEVVTGVDE TDLHRTWIKV VATRNTRERS SRLENMCWRI WHLARKKKQL
0101: EWEDLQRSAN RRLERELGRK DVTEDMSEDL SEGEKGDVLG ETPTLDSPRK RFQRNFSNLE VWSDSNKEKK LYIILVSLHG LVRGENMELG RDSDTGGQIK
0201: YVVELAKALA KMPGVYRVDL FTRQIASTEV DWSYGEPTEM LNTGPEDGDD TDLGESSGAY IIRIPFGPRD KYLRKELLWP YIQEFVDGAL AHIINMSKAL
0301: GEQIGGGQPV WPYVIHGHYA DAGDSAALLS GALNVPMVLT GHSLGRNKLE QLIKQARQSK EDINSTYRIM RRIEGEELSL DAAELVITST KQEIDEQWGL
0401: YDGFDVKLEK VLRARARRGV NCHGRFMPRM AVIPPGMDFS NVVDQEDTAD ADGDLAALTN VDGQSPKAVP TIWSEIMRFL TNPHKPMILA LSRPDPKKNI
0501: TTLVKAFGEC RPLRELANLT LIMGNRDDID EMSAGNASVL TTVLKLVDRY DLYGQVAFPK HHKQSDVPEI YRLAGKTKGV FINPALVEPF GLTLIEASAH
0601: GLPMVATKNG GPVDIHRALN NGLLVDPHDQ QAIADALLKL VSEKNLWHEC RKNGWKNIHL FSWPEHCRTY LTRIAACRMR HPQWKTDNPS DELAAEESSL
0701: NDSLKDVQDM SLRLSVDGEK TSLNESFDAS ATADAVQDQV NRVLSKMKRP ETSKQESEGD KKDNVPSKYP MLRRRRKLIV IALDCYDTNG APQKKMIQII
0801: QEILKTIKSD PQVARVSGFA ISTAMSMSEL AAFLISGNIK VTEFDALICS SGSEVFYPGT SSEEHGKLYP DPDYSSHIEY RWGGDGLRKT IWKLMNTQEG
0901: KEEKSVTCAI EEDVKSSNSH CISYLIKDRS KAKKVDDMRQ KLRMRGLRCH LMYCRNSTRM QVVPLLASRS QALRYLFVRW RLNVANMCVI LGETGDTDYE
1001: ELISGTHKTL ILKGAVEEGS ENLLRTSGSY LREDVVPPES PLIIYTGGNE TVEEFANALK QVCR
0101: EWEDLQRSAN RRLERELGRK DVTEDMSEDL SEGEKGDVLG ETPTLDSPRK RFQRNFSNLE VWSDSNKEKK LYIILVSLHG LVRGENMELG RDSDTGGQIK
0201: YVVELAKALA KMPGVYRVDL FTRQIASTEV DWSYGEPTEM LNTGPEDGDD TDLGESSGAY IIRIPFGPRD KYLRKELLWP YIQEFVDGAL AHIINMSKAL
0301: GEQIGGGQPV WPYVIHGHYA DAGDSAALLS GALNVPMVLT GHSLGRNKLE QLIKQARQSK EDINSTYRIM RRIEGEELSL DAAELVITST KQEIDEQWGL
0401: YDGFDVKLEK VLRARARRGV NCHGRFMPRM AVIPPGMDFS NVVDQEDTAD ADGDLAALTN VDGQSPKAVP TIWSEIMRFL TNPHKPMILA LSRPDPKKNI
0501: TTLVKAFGEC RPLRELANLT LIMGNRDDID EMSAGNASVL TTVLKLVDRY DLYGQVAFPK HHKQSDVPEI YRLAGKTKGV FINPALVEPF GLTLIEASAH
0601: GLPMVATKNG GPVDIHRALN NGLLVDPHDQ QAIADALLKL VSEKNLWHEC RKNGWKNIHL FSWPEHCRTY LTRIAACRMR HPQWKTDNPS DELAAEESSL
0701: NDSLKDVQDM SLRLSVDGEK TSLNESFDAS ATADAVQDQV NRVLSKMKRP ETSKQESEGD KKDNVPSKYP MLRRRRKLIV IALDCYDTNG APQKKMIQII
0801: QEILKTIKSD PQVARVSGFA ISTAMSMSEL AAFLISGNIK VTEFDALICS SGSEVFYPGT SSEEHGKLYP DPDYSSHIEY RWGGDGLRKT IWKLMNTQEG
0901: KEEKSVTCAI EEDVKSSNSH CISYLIKDRS KAKKVDDMRQ KLRMRGLRCH LMYCRNSTRM QVVPLLASRS QALRYLFVRW RLNVANMCVI LGETGDTDYE
1001: ELISGTHKTL ILKGAVEEGS ENLLRTSGSY LREDVVPPES PLIIYTGGNE TVEEFANALK QVCR
0001: MAGNEWINGY LEAILDSQAQ GIEETQQKPQ ASVNLREGDG QYFNPTKYFV EEVVTGVDET DLHRTWLKVV ATRNSRERNS RLENMCWRIW HLTRKKKQLE
0101: WEDSQRIANR RLEREQGRRD ATEDLSEDLS EGEKGDGLGE IVQPETPRRQ LQRNLSNLEI WSDDKKENRL YVVLISLHGL VRGENMELGS DSDTGGQVKY
0201: VVELARALAR MPGVYRVDLF TRQICSSEVD WSYAEPTEML TTAEDCDGDE TGESSGAYII RIPFGPRDKY LNKEILWPFV QEFVDGALAH ILNMSKVLGE
0301: QIGKGKPVWP YVIHGHYADA GDSAALLSGA LNVPMVLTGH SLGRNKLEQL LKQGRQSKED INSTYKIKRR IEAEELSLDA AELVITSTRQ EIDEQWGLYD
0401: GFDVKLEKVL RARARRGVNC HGRFMPRMAV IPPGMDFTNV EVQEDTPEGD GDLASLVGGT EGSSPKAVPT IWSEVMRFFT NPHKPMILAL SRPDPKKNIT
0501: TLLKAFGECR PLRELANLTL IMGNRDDIDE LSSGNASVLT TVLKLIDKYD LYGSVAYPKH HKQSDVPDIY RLAANTKGVF INPALVEPFG LTLIEAAAHG
0601: LPMVATKNGG PVDIHRALHN GLLVDPHDQE AIANALLKLV SEKNLWHECR INGWKNIHLF SWPEHCRTYL TRIAACRMRH PQWQTDADEV AAQDDEFSLN
0701: DSLKDVQDMS LRLSMDGDKP SLNGSLEPNS ADPVKQIMSR MRTPEIKSKP ELQGKKQSDN LGSKYPVLRR RERLVVLAVD CYDNEGAPDE KAMVPMIQNI
0801: IKAVRSDPQM AKNSGFAIST SMPLDELTRF LKSAKIQVSE FDTLICSSGS EVYYPGGEEG KLLPDPDYSS HIDYRWGMEG LKNTVWKLMN TTAVGGEARN
0901: KGSPSLIQED QASSNSHCVA YMIKDRSKVM RVDDLRQKLR LRGLRCHPMY CRNSTRMQIV PLLASRSQAL RYLFVRWRLN VANMYVVVGD RGDTDYEELI
1001: SGTHKTVIVK GLVTLGSDAL LRSTDLRDDI VPSESPFIGF LKVDSPVKEI TDIFKQLSKA TA
0101: WEDSQRIANR RLEREQGRRD ATEDLSEDLS EGEKGDGLGE IVQPETPRRQ LQRNLSNLEI WSDDKKENRL YVVLISLHGL VRGENMELGS DSDTGGQVKY
0201: VVELARALAR MPGVYRVDLF TRQICSSEVD WSYAEPTEML TTAEDCDGDE TGESSGAYII RIPFGPRDKY LNKEILWPFV QEFVDGALAH ILNMSKVLGE
0301: QIGKGKPVWP YVIHGHYADA GDSAALLSGA LNVPMVLTGH SLGRNKLEQL LKQGRQSKED INSTYKIKRR IEAEELSLDA AELVITSTRQ EIDEQWGLYD
0401: GFDVKLEKVL RARARRGVNC HGRFMPRMAV IPPGMDFTNV EVQEDTPEGD GDLASLVGGT EGSSPKAVPT IWSEVMRFFT NPHKPMILAL SRPDPKKNIT
0501: TLLKAFGECR PLRELANLTL IMGNRDDIDE LSSGNASVLT TVLKLIDKYD LYGSVAYPKH HKQSDVPDIY RLAANTKGVF INPALVEPFG LTLIEAAAHG
0601: LPMVATKNGG PVDIHRALHN GLLVDPHDQE AIANALLKLV SEKNLWHECR INGWKNIHLF SWPEHCRTYL TRIAACRMRH PQWQTDADEV AAQDDEFSLN
0701: DSLKDVQDMS LRLSMDGDKP SLNGSLEPNS ADPVKQIMSR MRTPEIKSKP ELQGKKQSDN LGSKYPVLRR RERLVVLAVD CYDNEGAPDE KAMVPMIQNI
0801: IKAVRSDPQM AKNSGFAIST SMPLDELTRF LKSAKIQVSE FDTLICSSGS EVYYPGGEEG KLLPDPDYSS HIDYRWGMEG LKNTVWKLMN TTAVGGEARN
0901: KGSPSLIQED QASSNSHCVA YMIKDRSKVM RVDDLRQKLR LRGLRCHPMY CRNSTRMQIV PLLASRSQAL RYLFVRWRLN VANMYVVVGD RGDTDYEELI
1001: SGTHKTVIVK GLVTLGSDAL LRSTDLRDDI VPSESPFIGF LKVDSPVKEI TDIFKQLSKA TA
Arabidopsis Description
SPS3SPS3F [Source:UniProtKB/TrEMBL;Acc:A0A178WKI5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.