Factsheet for Solyc12g009300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007505	Potato	cytosol	98.26	98.26
Solyc07g042550.2.1	Tomato	extracellular	91.3	91.3
HORVU0Hr1G019020.1	Barley	cytosol	15.16	81.88
KRH19379	Soybean	cytosol	81.37	81.37
KRH02557	Soybean	cytosol, endoplasmic reticulum, extracellular, mitochondrion	81.24	81.24
VIT_11s0016g00470.t01	Wine grape	cytosol	81.99	80.98
CDX88838	Canola	endoplasmic reticulum, golgi	74.29	80.48
AT3G43190.1	Thale cress	cytosol	80.62	80.32
KRH12615	Soybean	endoplasmic reticulum	79.38	79.28
Bra002332.1-P	Field mustard	cytosol	77.14	79.01
Bra006578.1-P	Field mustard	cytosol	78.63	78.54
CDX70945	Canola	cytosol	78.51	78.41
CDY16569	Canola	cytosol	78.39	78.39
CDX92432	Canola	cytosol	78.26	78.26
KRH37557	Soybean	endoplasmic reticulum	78.63	78.15
AT5G20830.1	Thale cress	cytosol	78.14	77.85
HORVU5Hr1G050660.1	Barley	cytosol	3.85	77.5
KXG19528	Sorghum	mitochondrion	74.53	74.81
GSMUA_Achr7P19810_001	Banana	mitochondrion	75.53	74.51
GSMUA_Achr6P10890_001	Banana	unclear	75.03	74.11
HORVU7Hr1G033230.2	Barley	mitochondrion	74.41	74.04
TraesCS7A01G158900.1	Wheat	golgi, nucleus	74.29	74.01
TraesCS7D01G036600.2	Wheat	golgi	74.78	73.86
OQU92441	Sorghum	cytosol	74.78	73.77
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	74.78	73.77
HORVU7Hr1G007220.8	Barley	cytosol	74.66	73.74
TraesCS7A01G040900.2	Wheat	cytosol	74.66	73.74
TraesCS4A01G446700.1	Wheat	cytosol	74.66	73.74
Zm00001d047253_P003	Maize	cytosol	74.66	73.65
Os03t0401300-01	Rice	extracellular	74.66	73.65
Os06t0194900-03	Rice	extracellular	73.91	73.64
HORVU2Hr1G030870.1	Barley	plasma membrane	74.53	73.53
GSMUA_Achr2P21870_001	Banana	cytosol	74.41	73.5
GSMUA_Achr3P01900_001	Banana	mitochondrion	74.41	73.41
Os07t0616800-01	Rice	cytosol	74.29	73.28
Zm00001d045042_P014	Maize	cytosol, mitochondrion	74.04	72.51
TraesCS2A01G168200.1	Wheat	golgi, unclear	74.78	72.44
Solyc07g042520.2.1	Tomato	cytosol, extracellular	72.17	72.35
TraesCS2B01G194200.1	Wheat	golgi	74.66	72.32
TraesCS2D01G175600.1	Wheat	golgi, unclear	74.66	72.24
TraesCS7B01G063400.1	Wheat	mitochondrion	73.91	72.03
TraesCS7D01G159800.1	Wheat	mitochondrion	73.79	71.91
Solyc09g098590.2.1	Tomato	cytosol	68.82	68.23
Solyc03g098290.2.1	Tomato	cytosol, nucleus	55.03	49.72
Solyc02g081300.2.1	Tomato	cytosol, nucleus	54.41	49.55
Solyc07g007790.2.1	Tomato	cytosol	19.88	15.18
Solyc09g092130.2.1	Tomato	nucleus, unclear	19.75	14.94
Solyc08g042000.2.1	Tomato	nucleus	19.38	14.93
Solyc11g045110.1.1	Tomato	cytosol	18.14	14.6

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_1	UniProt:K4DC18
PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF391	SUPFAM:SSF53756	EnsemblPlantsGene:Solyc12g009300.1
EnsemblPlants:Solyc12g009300.1.1	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI000276983E	SEG:seg

Description

Sucrose synthase [Source:UniProtKB/TrEMBL;Acc:K4DC18]

Coordinates

chr12:-:2573935..2577879

Molecular Weight (calculated)

92518.6 Da

IEP (calculated)

6.320

GRAVY (calculated)

-0.251

Length

805 amino acids

Sequence
(BLAST)

001: MAERVLTRVH RLRERVDATL AAHRNEILLF LSRIESHGKG ILKPHELLAE FDAIRQDDKD KLNEHAFEEL LKSTQEAIVL PPWVALAIRL RPGVWEYVRV
101: NVNALVVEEL SVPEYLQFKE ELVDGASNGN FVLELDFEPF TASFPKPTLT KSIGNGVEFL NRHLSAKMFH DKESMAPLLE FLRAHHYKGK TMMLNDRIHN
201: SNTLQNVLRK AEEYLIMLPP ETPFFEFEHK FQEIGLEKGW GDTAERVLEM VCMLLDLLEA PDSCTLEKFL GRIPMVFNVV ILSPHGYFAQ ENVLGYPDTG
301: GQVVYILDQV PALEREMLKR IKEQGLDIIP RILIVTRLLP DAVGTTCGQR LEKVYGTEHS HILRVPFRTE KGIVRKWISR FEVWPYMETF IEDVAKEISA
401: ELQAKPDLII GNYSEGNLAA SLLAHKLGVT QCTIAHALEK TKYPDSDIYW KKFDEKYHFS SQFTADLIAM NHTDFIITST FQEIAGSKDT VGQYESHMAF
501: TMPGLYRVVH GINVFDPKFN IVSPGADINL YFPYSESEKR LTAFHPEIDE LLYSDVENDE HLCVLKDRTK PILFTMARLD RVKNLTGLVE WYAKNPRLRG
601: LVNLVVVGGD RRKESKDLEE QAEMKKMYEL IETHNLNGQF RWISSQMNRV RNGELYRYIA DTKGAFVQPA FYEAFGLTVV EAMTCGLPTF ATNHGGPAEI
701: IVHGKSGFHI DPYHGEQAAD LLADFFEKCK KEPSHWETIS TGGLKRIQEK YTWQIYSERL LTLAAVYGFW KHVSKLDRLE IRRYLEMFYA LKYRKMAEAV
801: PLAAE

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.