Factsheet for TraesCS2B01G194200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G168200.1	Wheat	golgi, unclear	98.8	98.8
HORVU2Hr1G030870.1	Barley	plasma membrane	96.39	98.16
TraesCS2D01G175600.1	Wheat	golgi, unclear	98.19	98.08
Os07t0616800-01	Rice	cytosol	91.1	92.77
GSMUA_Achr6P10890_001	Banana	unclear	82.31	83.93
GSMUA_Achr2P21870_001	Banana	cytosol	81.95	83.56
GSMUA_Achr3P01900_001	Banana	mitochondrion	81.71	83.21
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	81.47	82.97
GSMUA_Achr7P19810_001	Banana	mitochondrion	78.82	80.27
TraesCS7B01G063400.1	Wheat	mitochondrion	77.38	77.84
KRH19379	Soybean	cytosol	73.29	75.65
KRH02557	Soybean	cytosol, endoplasmic reticulum, extracellular, mitochondrion	73.16	75.53
PGSC0003DMT400007505	Potato	cytosol	72.44	74.78
VIT_11s0016g00470.t01	Wine grape	cytosol	73.29	74.72
Solyc12g009300.1.1	Tomato	nucleus	72.32	74.66
CDX88838	Canola	endoplasmic reticulum, golgi	66.67	74.56
KRH12615	Soybean	endoplasmic reticulum	71.96	74.19
AT3G43190.1	Thale cress	cytosol	71.84	73.89
KRH37557	Soybean	endoplasmic reticulum	71.48	73.33
Solyc07g042550.2.1	Tomato	extracellular	71.0	73.29
Bra002332.1-P	Field mustard	cytosol	69.31	73.28
CDY16569	Canola	cytosol	70.76	73.04
CDX92432	Canola	cytosol	70.64	72.92
PGSC0003DMT400035262	Potato	cytosol	70.76	72.77
Bra006578.1-P	Field mustard	cytosol	70.4	72.58
CDX70945	Canola	cytosol	70.16	72.33
AT5G20830.1	Thale cress	cytosol	70.04	72.03
TraesCS4B01G167500.1	Wheat	cytosol	66.55	68.36
Solyc07g042520.2.1	Tomato	cytosol, extracellular	63.78	66.0
PGSC0003DMT400035264	Potato	cytosol	63.42	65.63
TraesCS7B01G482200.1	Wheat	cytosol	54.87	52.96
TraesCS2B01G424300.1	Wheat	cytosol	54.15	52.08
TraesCS6B01G466600.1	Wheat	cytosol	52.23	50.0
TraesCS7B01G434300.1	Wheat	cytosol	19.01	16.27
TraesCS3B01G461800.1	Wheat	nucleus	20.1	15.62
TraesCS4B01G091100.1	Wheat	cytosol	19.13	15.0
TraesCS6B01G173000.2	Wheat	endoplasmic reticulum, plasma membrane	18.17	14.52

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016157	GO:GO:0016740	InterPro:Glyco_trans_1	PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526
PANTHER:PTHR12526:SF398	SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	EnsemblPlantsGene:TraesCS2B01G194200
EnsemblPlants:TraesCS2B01G194200.1	TIGR:cd03800	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:171030429..171034964

Molecular Weight (calculated)

94383.6 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.236

Length

831 amino acids

Sequence
(BLAST)

001: MICFPKHNLL GLRTAMGETA GERALSRIHS VRERIGDSLS AHTNELVAVF SRLVNQGKGM LQPHQITAEY NAAIPEAERE KLKDTAFEDL LRGAQEAIVI
101: PPWVALAIRP RPGVWEYVRV NVSELGVEEL SIAEYLQFKE QLANGSIDNN FVLELDFEPF NASFPRPSLS KSIGNGVQFL NRHLSSKLFH DKESMYPLLN
201: FLRAHNYKGM TMMLNDRIRS LSTLQGALRK AETHLSGLPA DTPYSEFHHR FQELGLEKGW GDCAQRASET IHLLLDLLEA PDPSSLEKFL GTIPMVFNVV
301: ILSPHGYFAQ ANVLGYPDTG GQIVYILDQV RAMENEMLLR IKQQGLDITP KILIVTRLLP DAHGTTCGQR LEKVLGTEHT HILRVPFKTE DGIVRKWISR
401: FEVWPYLEAY TDDVAHEIAG ELQATPDLII GNYSDGNLVA CLLAHKLGVT HCTIAHALEK TKYPNSDLYW KKFEDHYHFS CQFTADLIAM NHADFIITST
501: FQEIAGNKDT VGQYESHMAF TMPGLYRVVH GIDVFDPKFN IVSPGADMSI YFPYTEQQKR LTSLHTEIEE LLFSDVENAE HKFVLKDKKK PIIFSMARLD
601: RVKNMTGLVE MYGRNPRLQE LVNLVVVCGD HGKVSKDKEE QAEFKKMFDL IEQYNLIGHI RWISAQMNRV RNGELYRYIC DMKGAFVQPA FYEAFGLTVI
701: EAMTCGLPTF ATAYGGPAEI IVHGVSGYHI DPYQNDKASA LLVDFFGKCQ EDPSHWNKIS QGGLQRIEEK YTWKLYSERL MTLSGVYGFW KYVSNLDRRE
801: TRRYLEMLYA LKYRKMAATV PLAVEGETSG K

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.