CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37557	Soybean	endoplasmic reticulum	97.89	97.41
KRH19379	Soybean	cytosol	90.07	90.19
KRH02557	Soybean	cytosol, endoplasmic reticulum, extracellular, mitochondrion	89.21	89.32
HORVU0Hr1G019020.1	Barley	cytosol	15.51	83.89
CDX88838	Canola	endoplasmic reticulum, golgi	77.3	83.85
AT3G43190.1	Thale cress	cytosol	83.62	83.42
CDX92432	Canola	cytosol	83.25	83.35
Bra002332.1-P	Field mustard	cytosol	81.27	83.33
CDY16569	Canola	cytosol	82.88	82.98
Bra006578.1-P	Field mustard	cytosol	82.63	82.63
AT5G20830.1	Thale cress	cytosol	82.75	82.55
CDX70945	Canola	cytosol	82.38	82.38
VIT_11s0016g00470.t01	Wine grape	cytosol	82.51	81.6
Solyc07g042550.2.1	Tomato	extracellular	79.78	79.88
PGSC0003DMT400007505	Potato	cytosol	79.4	79.5
Solyc12g009300.1.1	Tomato	nucleus	79.28	79.38
PGSC0003DMT400035262	Potato	cytosol	79.16	78.96
GSMUA_Achr7P19810_001	Banana	mitochondrion	78.29	77.33
KXG19528	Sorghum	mitochondrion	75.56	75.94
HORVU7Hr1G033230.2	Barley	mitochondrion	75.56	75.28
GSMUA_Achr6P10890_001	Banana	unclear	75.93	75.09
TraesCS7A01G158900.1	Wheat	golgi, nucleus	75.19	75.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	75.93	75.0
GSMUA_Achr2P21870_001	Banana	cytosol	75.43	74.6
Zm00001d047253_P003	Maize	cytosol	75.43	74.51
Os06t0194900-03	Rice	extracellular	74.57	74.38
OQU92441	Sorghum	cytosol	75.19	74.26
GSMUA_Achr3P01900_001	Banana	mitochondrion	75.06	74.14
TraesCS7D01G036600.2	Wheat	golgi	74.81	73.99
TraesCS7A01G040900.2	Wheat	cytosol	74.81	73.99
TraesCS4A01G446700.1	Wheat	cytosol	74.81	73.99
HORVU7Hr1G007220.8	Barley	cytosol	74.81	73.99
Os07t0616800-01	Rice	cytosol	74.81	73.9
Zm00001d045042_P014	Maize	cytosol, mitochondrion	75.31	73.84
Os03t0401300-01	Rice	extracellular	74.57	73.65
TraesCS7D01G159800.1	Wheat	mitochondrion	74.81	73.0
TraesCS7B01G063400.1	Wheat	mitochondrion	74.69	72.88
HORVU2Hr1G030870.1	Barley	plasma membrane	73.7	72.79
TraesCS2A01G168200.1	Wheat	golgi, unclear	74.32	72.08
TraesCS2D01G175600.1	Wheat	golgi, unclear	74.32	72.0
TraesCS2B01G194200.1	Wheat	golgi	74.19	71.96
PGSC0003DMT400035264	Potato	cytosol	70.97	71.23
Solyc07g042520.2.1	Tomato	cytosol, extracellular	70.72	70.98
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	70.97	70.44
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	70.47	69.95
HORVU5Hr1G050660.1	Barley	cytosol	3.35	67.5
KRH12090	Soybean	endoplasmic reticulum	66.63	66.96
KRH72916	Soybean	cytosol	54.22	52.02
KRH17270	Soybean	cytosol	54.09	51.9
KRH30890	Soybean	cytosol	52.73	50.3
KRH09470	Soybean	cytosol, plastid	54.22	47.5
KRH38924	Soybean	plastid	53.97	47.23
KRH62455	Soybean	cytosol	15.88	16.47
KRH03629	Soybean	endoplasmic reticulum	21.59	16.43
KRH20178	Soybean	nucleus	21.46	16.34
KRH14493	Soybean	cytosol	21.34	16.18
KRH56446	Soybean	cytosol	20.6	16.01
KRG98934	Soybean	cytosol	20.72	15.86
KRH46034	Soybean	cytosol	20.72	15.83

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	EntrezGene:100819730	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000
EMBL:ACUP02009352	EnsemblPlantsGene:GLYMA_15G182600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757
InterPro:Glyco_trans_1	UniProt:I1MHJ6	EnsemblPlants:KRH12615	ProteinID:KRH12615	ProteinID:KRH12615.1	PFAM:PF00534
PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF391	MetaCyc:PWY-3801	SUPFAM:SSF53756	InterPro:Sucrose_synth
InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI000233B00A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:17910131..17916426

Molecular Weight (calculated)

92720.4 Da

IEP (calculated)

6.204

GRAVY (calculated)

-0.298

Length

806 amino acids

Sequence
(BLAST)

001: MANHPLTHSH SFRERFDETL TGHRNEILAL LSRLEAKGKG ILQHHQVVAE FEEIPEESRK KLQGGVFGEV LRSTQEAIVL PPFVALAVRP RPGVWEYLRV
101: NVHMLVVDEL LPAEYLRFKE ELVEGSSNGN FVLELDFEPF NASFPRPTLN KSIGNGVEFL NRHLSAKLFH DKESMQPLLE FLRLHSYKGK TMMLNDKVQS
201: LDSLQHVLRK AEEYLTSVAP ETPYSEFENK FREIGLERGW GDIAERVLEM IQLLLDLLEA PDPCTLETFL GRVPMVFNVV ILSPHGYFAQ DNVLGYPDTG
301: GQVVYILDQV RALENEMLNR IKKQGLDITP RILIITRLLP DAVGTTCGQR LERVYDTEYC DILRVPFRTE KGIVRKWISR FEVWPYLETY TEDVALELAK
401: ELQAKPDLIV GNYSDGNIVA SLLAHKLGVT QCTIAHALEK TKYPESDIYW KKFEEKYHFS CQFTADLFAM NHTDFIITST FQEIAGSKDT VGQYESHTAF
501: TLPGLYRVVH GIDPFDPKFN IVSPGADMSI YFPYTETERR LTEFHPDIEE LLYSSVENEE HICVLKDRNK PIIFTMARLD RVKNITGLVE WYGKNARLRE
601: LVNLVVVAGD RRKESKDLEE KAEMKKMYGL IETYKLNGQF RWISSQMNRV RNGELYRVIC DTRGAFVQPA VYEAFGLTVV EAMTCGLPTF ATCNGGPAEI
701: IVHGKSGYHI DPYHGDRAAE ILVEFFEKSK ADPSHWDKIS QGGLKRIHEK YTWQIYSDRL LTLTGVYGFW KHVTNLERRE SKRYLEMFYA LKYRKLAESV
801: PLAIEE

Best Arabidopsis Sequence Match ( AT3G43190.1 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.