CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, extracellular, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 25724908
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19379	Soybean	cytosol	98.88	98.88
KRH12615	Soybean	endoplasmic reticulum	89.32	89.21
KRH37557	Soybean	endoplasmic reticulum	88.2	87.65
CDX88838	Canola	endoplasmic reticulum, golgi	78.39	84.93
AT3G43190.1	Thale cress	cytosol	84.97	84.65
Bra006578.1-P	Field mustard	cytosol	84.1	84.0
CDX92432	Canola	cytosol	83.98	83.98
CDY16569	Canola	cytosol	83.98	83.98
Bra002332.1-P	Field mustard	cytosol	81.99	83.97
CDX70945	Canola	cytosol	83.85	83.75
AT5G20830.1	Thale cress	cytosol	83.73	83.42
VIT_11s0016g00470.t01	Wine grape	cytosol	83.98	82.94
HORVU0Hr1G019020.1	Barley	cytosol	15.28	82.55
PGSC0003DMT400007505	Potato	cytosol	81.49	81.49
Solyc12g009300.1.1	Tomato	nucleus	81.24	81.24
Solyc07g042550.2.1	Tomato	extracellular	81.24	81.24
PGSC0003DMT400035262	Potato	cytosol	80.62	80.32
GSMUA_Achr7P19810_001	Banana	mitochondrion	77.89	76.84
GSMUA_Achr6P10890_001	Banana	unclear	77.14	76.2
KXG19528	Sorghum	mitochondrion	75.53	75.81
GSMUA_Achr2P21870_001	Banana	cytosol	76.52	75.58
TraesCS7A01G158900.1	Wheat	golgi, nucleus	75.78	75.5
OQU92441	Sorghum	cytosol	76.52	75.49
Zm00001d047253_P003	Maize	cytosol	76.4	75.37
HORVU7Hr1G033230.2	Barley	mitochondrion	75.65	75.28
Os06t0194900-03	Rice	extracellular	75.53	75.25
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	76.27	75.25
GSMUA_Achr3P01900_001	Banana	mitochondrion	76.15	75.12
TraesCS7D01G036600.2	Wheat	golgi	75.65	74.72
HORVU7Hr1G007220.8	Barley	cytosol	75.65	74.72
TraesCS7A01G040900.2	Wheat	cytosol	75.65	74.72
TraesCS4A01G446700.1	Wheat	cytosol	75.65	74.72
Os07t0616800-01	Rice	cytosol	75.65	74.63
Os03t0401300-01	Rice	extracellular	75.53	74.51
Zm00001d045042_P014	Maize	cytosol, mitochondrion	75.53	73.97
HORVU2Hr1G030870.1	Barley	plasma membrane	74.91	73.9
TraesCS7D01G159800.1	Wheat	mitochondrion	75.28	73.37
TraesCS2A01G168200.1	Wheat	golgi, unclear	75.65	73.29
TraesCS7B01G063400.1	Wheat	mitochondrion	75.16	73.24
TraesCS2B01G194200.1	Wheat	golgi	75.53	73.16
TraesCS2D01G175600.1	Wheat	golgi, unclear	75.53	73.08
Solyc07g042520.2.1	Tomato	cytosol, extracellular	71.18	71.36
PGSC0003DMT400035264	Potato	cytosol	70.68	70.86
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	70.81	70.2
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	70.56	69.95
KRH12090	Soybean	endoplasmic reticulum	67.58	67.83
HORVU5Hr1G050660.1	Barley	cytosol	3.23	65.0
KRH17270	Soybean	cytosol	55.53	53.21
KRH72916	Soybean	cytosol	55.28	52.98
KRH30890	Soybean	cytosol	54.04	51.48
KRH09470	Soybean	cytosol, plastid	55.65	48.7
KRH38924	Soybean	plastid	55.28	48.32
KRH03629	Soybean	endoplasmic reticulum	21.49	16.34
KRH20178	Soybean	nucleus	21.49	16.34
KRH14493	Soybean	cytosol	21.49	16.27
KRG98934	Soybean	cytosol	20.99	16.05
KRH46034	Soybean	cytosol	20.99	16.02
KRH62455	Soybean	cytosol	15.28	15.83
KRH56446	Soybean	cytosol	20.25	15.72

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	EntrezGene:100788584	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000
EMBL:ACUP02010310	EnsemblPlantsGene:GLYMA_17G045800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757
InterPro:Glyco_trans_1	UniProt:K7MJY8	EnsemblPlants:KRH02557	ProteinID:KRH02557	ProteinID:KRH02557.1	ProteinID:KRH02558.1
PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF391	MetaCyc:PWY-3801	SUPFAM:SSF53756
InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI000233E25D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:3404918..3410491

Molecular Weight (calculated)

92195.7 Da

IEP (calculated)

6.319

GRAVY (calculated)

-0.280

Length

805 amino acids

Sequence
(BLAST)

001: MATDRLTRVH SLRERLDETL TANRNEILAL LSRIEAKGKG ILQHHQVIAE FEEIPEENRQ KLTDGAFGEV LRSTQEAIVL PPWVALAVRP RPGVWEYLKV
101: NVHALVVEEL QPAEYLHFKE ELVDGSSNGN FVLELDFEPF NAAFPRPTLN KSIGNGVQFL NRHLSAKLFH DKESLHPLLE FLRLHSVKGK TLMLNDRIQN
201: PDALQHVLRK AEEYLGTVPP ETPYSEFEHK FQEIGLERGW GDNAERVLES IQLLLDLLEA PDPCTLETFL GRIPMVFNVV ILSPHGYFAQ DNVLGYPDTG
301: GQVVYILDQV RALENEMLHR IKQQGLDIVP RILIITRLLP DAIGTTCGQR LEKVFGTEHS HILRVPFRTE KGIVRQWISR FEVWPYLETY TEDVAHELAK
401: ELQGKPDLIV GNYSDGNIVA SLLAHKLGVT QCTIAHALEK TKYPESDIYW KKLEERYHFS CQFTADLFAM NHTDFIITST FQEIAGSKDT VGQYESHTAF
501: TLPGLYRVVH GIDVFDPKFN IVSPGADQTI YFPPTETSRR LTSFHPEIEE LLYSSVENEE HICVLKDRSK PIIFTMARLD RVKNITGLVE WYGKNAKLRE
601: LVNLVVVAGD RRKESKDLEE KAEMKKMYGL IETYKLNGQF RWISSQMNRV RNGELYRVIC DTKGAFVQPA IYEAFGLTVV EAMTCGLPTF ATCNGGPAEI
701: IVHGKSGFHI DPYHGDRAAD LLVDFFEKCK LDPTHWETIS KAGLQRIEEK YTWQIYSQRL LTLTGVYGFW KHVSNLDRRE SRRYLEMFYA LKYRKLAESV
801: PLAVE

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.