Factsheet for Solyc07g042550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035262	Potato	cytosol	97.76	97.4
Solyc12g009300.1.1	Tomato	nucleus	91.3	91.3
KRH19379	Soybean	cytosol	81.49	81.49
KRH02557	Soybean	cytosol, endoplasmic reticulum, extracellular, mitochondrion	81.24	81.24
HORVU0Hr1G019020.1	Barley	cytosol	15.03	81.21
VIT_11s0016g00470.t01	Wine grape	cytosol	81.24	80.25
KRH12615	Soybean	endoplasmic reticulum	79.88	79.78
CDX88838	Canola	endoplasmic reticulum, golgi	73.42	79.54
AT3G43190.1	Thale cress	cytosol	79.75	79.46
KRH37557	Soybean	endoplasmic reticulum	79.01	78.52
Bra002332.1-P	Field mustard	cytosol	76.27	78.12
CDY16569	Canola	cytosol	78.01	78.01
CDX70945	Canola	cytosol	77.89	77.79
CDX92432	Canola	cytosol	77.76	77.76
Bra006578.1-P	Field mustard	cytosol	77.76	77.67
HORVU5Hr1G050660.1	Barley	cytosol	3.85	77.5
AT5G20830.1	Thale cress	cytosol	77.27	76.98
GSMUA_Achr6P10890_001	Banana	unclear	75.03	74.11
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	75.03	74.02
GSMUA_Achr7P19810_001	Banana	mitochondrion	74.91	73.9
KXG19528	Sorghum	mitochondrion	73.42	73.69
GSMUA_Achr2P21870_001	Banana	cytosol	74.41	73.5
GSMUA_Achr3P01900_001	Banana	mitochondrion	74.41	73.41
Os03t0401300-01	Rice	extracellular	74.29	73.28
OQU92441	Sorghum	cytosol	74.04	73.04
TraesCS7A01G158900.1	Wheat	golgi, nucleus	73.29	73.02
TraesCS7D01G036600.2	Wheat	golgi	73.91	73.01
HORVU7Hr1G007220.8	Barley	cytosol	73.91	73.01
Solyc07g042520.2.1	Tomato	cytosol, extracellular	72.8	72.98
TraesCS7A01G040900.2	Wheat	cytosol	73.79	72.88
TraesCS4A01G446700.1	Wheat	cytosol	73.79	72.88
HORVU7Hr1G033230.2	Barley	mitochondrion	73.17	72.81
Zm00001d047253_P003	Maize	cytosol	73.79	72.79
Os06t0194900-03	Rice	extracellular	73.04	72.77
Os07t0616800-01	Rice	cytosol	73.29	72.3
HORVU2Hr1G030870.1	Barley	plasma membrane	73.17	72.18
Zm00001d045042_P014	Maize	cytosol, mitochondrion	73.17	71.65
TraesCS2A01G168200.1	Wheat	golgi, unclear	73.54	71.24
TraesCS2B01G194200.1	Wheat	golgi	73.29	71.0
TraesCS7B01G063400.1	Wheat	mitochondrion	72.8	70.94
TraesCS7D01G159800.1	Wheat	mitochondrion	72.8	70.94
TraesCS2D01G175600.1	Wheat	golgi, unclear	73.29	70.91
Solyc09g098590.2.1	Tomato	cytosol	68.82	68.23
Solyc03g098290.2.1	Tomato	cytosol, nucleus	54.78	49.49
Solyc02g081300.2.1	Tomato	cytosol, nucleus	54.16	49.32
Solyc07g007790.2.1	Tomato	cytosol	20.12	15.37
Solyc08g042000.2.1	Tomato	nucleus	19.63	15.12
Solyc09g092130.2.1	Tomato	nucleus, unclear	19.75	14.94
Solyc11g045110.1.1	Tomato	cytosol	18.51	14.9

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	ProteinID:ADM47608.1
UniProt:E0Z1D0	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_1
PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF391	SUPFAM:SSF53756	EnsemblPlantsGene:Solyc07g042550.2
EnsemblPlants:Solyc07g042550.2.1	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI0001E40EB1	:

Description

Sucrose synthase [Source:UniProtKB/TrEMBL;Acc:E0Z1D0]

Coordinates

chr7:-:55976889..55982494

Molecular Weight (calculated)

92595.6 Da

IEP (calculated)

6.332

GRAVY (calculated)

-0.254

Length

805 amino acids

Sequence
(BLAST)

001: MAQRVLTRVH SLRERLDATL DAHRNEILLF LSRIESHGKG ILKPHQLLAE FESIQKEDKD KLNDHAFEEV LKSTQEAIVL PPWVALAIRL RPGVWEYVRV
101: NVNALSVEEL TVPEFLQFKE ELVNGTSSDN FVLELDFEPF TASFPKPTLT KSIGNGVEFL NRHLSAKMFH DKESMTPLLE FLRVHHYNGK SMMLNDRIQN
201: LYTLQKVLRK AEEYLTTLSP ETSYSSFEHK FQEIGLERGW GDTAERVLEM ICMLLDLLEA PDSCTLEKFL SRIPMVFNVV ILSPHGYFAQ ENVLGYPDTG
301: GQVVYILDQV PALEREMLKR IKEQGLDIKP RILIVTRLLP DAVGTTCGQR LEKVFGTEHS HILRVPFRTE KGIVRKWISR FEVWPYMETF IEDVGKEITA
401: ELQAKPDLII GNYSEGNLAA SLLAHKLGVT QCTIAHALEK TKYPDSDIYL NKFDEKYHFS AQFTADLIAM NHTDFIITST FQEIAGSKDT VGQYESHMAF
501: TMPGLYRVVH GIDVFDPKFN IVSPGADVNL YFPYSEKEKR LTTFHPEIED LLFSDVENEE HLCVLKDRNK PIIFTMARLD RVKNLTGLVE WYAKNPRLRE
601: LVNLVVVGGD RRKESKDLEE QAEMKKMYEL IKTHNLNGQF RWISSQMNRV RNGELYRYIA DTRGAFVQPA FYEAFGLTVV EAMSCGLPTF ATNQGGPAEI
701: IVHGKSGFQI DPYHGEQAAD LLAEFFEKCK VDPSHWEAIS KGGLKRIQEK YTWQIYSDRL LTLAAVYGFW KHVSKLDRLE IRRYLEMFYA LKFRKLAELV
801: PLAVE

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.