Factsheet for Solyc02g081300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043117	Potato	cytosol	92.99	97.86
KRH17270	Soybean	cytosol	71.95	75.71
VIT_04s0079g00230.t01	Wine grape	cytosol	72.29	75.44
KRH72916	Soybean	cytosol	71.38	75.12
TraesCS4A01G492600.1	Wheat	cytosol	46.15	72.86
KRH30890	Soybean	cytosol	69.12	72.31
GSMUA_Achr3P13980_001	Banana	cytosol	67.65	70.85
GSMUA_Achr9P21240_001	Banana	cytosol	67.53	70.73
AT5G37180.1	Thale cress	cytosol	65.05	68.7
Solyc03g098290.2.1	Tomato	cytosol, nucleus	69.23	68.69
Os04t0249500-00	Rice	cytosol	65.05	68.13
Bra039502.1-P	Field mustard	cytosol	64.48	68.1
HORVU7Hr1G120520.1	Barley	cytosol	66.4	68.02
CDY71780	Canola	cytosol, extracellular	27.38	67.98
TraesCS2A01G406700.1	Wheat	cytosol	66.4	67.94
TraesCS2B01G424300.1	Wheat	cytosol	66.29	67.82
TraesCS2D01G403600.1	Wheat	cytosol	66.4	67.78
Os04t0309600-01	Rice	cytosol, plasma membrane	64.71	67.77
TraesCS7B01G482200.1	Wheat	cytosol	65.84	67.6
Os02t0831500-01	Rice	plastid	64.59	67.49
TraesCS7A01G557600.1	Wheat	cytosol	65.72	67.48
TraesCS7D01G552800.1	Wheat	cytosol	65.72	67.48
CDY38565	Canola	cytosol	64.48	67.38
CDY26996	Canola	cytosol	64.14	67.02
HORVU6Hr1G094880.6	Barley	cytosol	64.14	65.85
TraesCSU01G082000.1	Wheat	plastid	64.59	65.78
TraesCS6D01G403800.1	Wheat	cytosol	64.03	65.28
OQU77175	Sorghum	plastid	66.18	65.22
TraesCS6B01G466600.1	Wheat	cytosol	63.8	64.98
KXG31429	Sorghum	cytosol	61.88	63.38
CDX72985	Canola	cytosol	66.97	63.38
CDX96472	Canola	cytosol	66.74	63.1
Bra003845.1-P	Field mustard	cytosol	67.08	63.09
Bra015995.1-P	Field mustard	cytosol	66.97	62.78
CDX68228	Canola	cytosol	66.74	62.77
CDY11107	Canola	cytosol	66.63	62.66
Zm00001d051837_P002	Maize	cytosol	60.18	62.51
AT1G73370.1	Thale cress	cytosol	66.29	62.21
Zm00001d050151_P001	Maize	cytosol	8.82	56.93
Solyc09g098590.2.1	Tomato	cytosol	52.15	56.77
Zm00001d014119_P001	Maize	cytosol	9.73	56.21
Solyc12g009300.1.1	Tomato	nucleus	49.55	54.41
Solyc07g042550.2.1	Tomato	extracellular	49.32	54.16
Solyc07g042520.2.1	Tomato	cytosol, extracellular	48.87	53.8
Solyc11g045110.1.1	Tomato	cytosol	18.33	16.2
Solyc08g042000.2.1	Tomato	nucleus	18.78	15.89
Solyc07g007790.2.1	Tomato	cytosol	18.78	15.75
Solyc09g092130.2.1	Tomato	nucleus, unclear	18.78	15.6

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0005985
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757
GO:GO:0030312	GO:GO:0080165	InterPro:Glyco_trans_1	UniProt:K4BA00	PFAM:PF00534	PFAM:PF00862
PANTHER:PTHR12526	PANTHER:PTHR12526:SF296	SUPFAM:SSF53756	EnsemblPlantsGene:Solyc02g081300.2	EnsemblPlants:Solyc02g081300.2.1	InterPro:Sucrose_synth
InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI000276777F	SEG:seg	:	:

Description

Sucrose synthase [Source:UniProtKB/TrEMBL;Acc:K4BA00]

Coordinates

chr2:-:45315741..45320028

Molecular Weight (calculated)

100695.0 Da

IEP (calculated)

8.390

GRAVY (calculated)

-0.390

Length

884 amino acids

Sequence
(BLAST)

001: MATTPALKRS ESIADSMPEA LRQSRYHMKR CFAKYIEQGK RMMKLHNLMD ELEKVIDDPA ERNHVLEGLL GYILCTTMEA AVVPPYIAFA TRQNPGFWEY
101: VKVNANDLSV DGITATEYLK FKEMIVDESW YRKHCSFYNT FYGFIPPIRK VKTHKDYLCV NMKCRAKDEY ALEIDFGAVD FSTPRLTLSS SIGNGLSYVS
201: KFLTSKLNAS SMSAQCLVDY LLTLNHQGDK LMINETLSTV AKLQAALVVA EASISSLPTD TPYQSFELRF KEWGFEKGWG DTAERVRDTM RTLSEVLQAP
301: DPSNIEKFFG RVPTVFNIVL FSVHGYFGQA DVLGLPDTGG QVVYVLDQVV AFEEELLQRI KQQGLNVKPQ ILVLTRLIPD AKGTKCNQEL EPINNTKHSH
401: ILRVPFRTEK GVLNQWVSRF DIYPYLERYT QDASDKIIEL MEGKPDLIIG NYTDGNLVAS LMARKLGITL GTIAHALEKT KYEDSDIKLK ELDPKYHFSC
501: QFTADLIAMN SADFVITSTY QEIAGSKDRP GQYESHSAFT LPGLYRVASG INVFDPKFNI AAPGADQSVY FPYTEKQKRL TDFRPAIEKL LFSKVDNDEH
601: IGYLEDRTKP ILFTMARLDT VKNTTGLTEW FGKNKKLRSL VNLVVVGGSF DPTKSKDREE AAEIKKMHVL IEKYQLKGQI RWIAAQTDRY RNSELYRTIA
701: DSKGAFVQPA LYEAFGLTVI EAMNCGLPTF ATSQGGPAEI IVDGISGFHI DPNNGDESSN KIANFFQKCK EDPEHWNRIS AQGLKRIYEC YTWKIYANKV
801: LNMGSIYTFW RTLYKDQKQA KQRYIDTFYN LEFRNLIKDV PIKIDEKTEG PKERPERVKV KPQLSQRRSQ SRLQKLFGSS NSQS

Best Arabidopsis Sequence Match ( AT1G73370.1 )
(BLAST)

001: MSSSSQAMLQ KSDSIAEKMP DALKQSRYHM KRCFASFVGG GKKLMKREHL MNEIEKCIED SRERSKILEG LFGYILTCTQ EAAVVPPFVA LAARPNPGFW
101: EYVKVNSGDL TVDEITATDY LKLKESVFDE SWSKDENALE IDFGAIDFTS PRLSLSSSIG KGADYISKFI SSKLGGKSDK LEPLLNYLLR LNHHGENLMI
201: NDDLNTVAKL QKSLMLAVIV VSTYSKHTPY ETFAQRLKEM GFEKGWGDTA ERVKETMIIL SEVLEAPDNG KLDLLFSRLP TVFNVVIFSV HGYFGQQDVL
301: GLPDTGGQVV YILDQVRALE EELLIRINQQ GLGFKPQILV VTRLIPEARG TKCDQELEAI EGTKHSHILR VPFVTNKGVL RQWVSRFDIY PYLERFTQDA
401: TSKILQRLDC KPDLIIGNYT DGNLVASLMA TKLGVTQGTI AHALEKTKYE DSDAKWKELD PKYHFSCQFT ADLIAMNVTD FIITSTYQEI AGSKDRPGQY
501: ESHTAFTMPG LCRVVSGIDV FDPKFNIAAP GADQSVYFPY TEKDKRFTKF HPSIQELLYN EKDNAEHMGY LADREKPIIF SMARLDTVKN ITGLVEWYGK
601: DKRLREMANL VVVAGFFDMS KSNDREEKAE IKKMHDLIEK YKLKGKFRWI AAQTDRYRNS ELYRCIADTK GVFVQPALYE AFGLTVIEAM NCGLPTFATN
701: QGGPAEIIVD GVSGFHIDPN NGDESVTKIG DFFSKCRSDG LYWDNISKGG LKRIYECYTW KIYAEKLLKM GSLYGFWRQV NEDQKKAKKR YIEMLYNLQF
801: KQLTKKVTIP EDKPLPLRLA SLRNLLPKKT TNLGAGSKQK EVTETEKTKQ KSKDGQEQHD VKVGEREVRE GLLAADASER VKKVLESSEE KQKLEKMKIA
901: YGQQHSQGAS PVRNLFWSVV VCLYICYILK QRFFGANSAQ EY

Arabidopsis Description

SUS6Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3K7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.