Factsheet for Os04t0309600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 21533550
plasma membrane: 21533550

plasma membrane: 27800704

gfp PMID: 21533550 doi

JI Cho, HB Kim, CY Kim, TR Hahn, JS Jeon

Graduate School of Biotechnology, Kyung Hee University, Yongin, 446-701, Korea.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0249500-00	Rice	cytosol	99.29	99.29
Zm00001d050151_P001	Maize	cytosol	14.34	88.32
TraesCS7A01G557600.1	Wheat	cytosol	89.93	88.15
TraesCS7D01G552800.1	Wheat	cytosol	89.81	88.04
TraesCS7B01G482200.1	Wheat	cytosol	89.69	87.92
TraesCS2B01G424300.1	Wheat	cytosol	89.69	87.62
TraesCS2A01G406700.1	Wheat	cytosol	89.69	87.62
HORVU7Hr1G120520.1	Barley	cytosol	89.34	87.37
TraesCS2D01G403600.1	Wheat	cytosol	89.45	87.18
Zm00001d014119_P001	Maize	cytosol	15.52	85.62
OQU77175	Sorghum	plastid	90.28	84.95
Os02t0831500-01	Rice	plastid	78.32	78.13
GSMUA_Achr3P13980_001	Banana	cytosol	74.88	74.88
GSMUA_Achr9P21240_001	Banana	cytosol	74.53	74.53
PGSC0003DMT400079728	Potato	cytosol	14.46	69.32
VIT_04s0079g00230.t01	Wine grape	cytosol	68.01	67.77
PGSC0003DMT400043117	Potato	cytosol	67.42	67.74
KRH72916	Soybean	cytosol	67.3	67.62
KRH17270	Soybean	cytosol	67.18	67.5
VIT_17s0053g00700.t01	Wine grape	cytosol	70.73	65.89
CDY71780	Canola	cytosol, extracellular	27.73	65.73
Solyc02g081300.2.1	Tomato	cytosol, nucleus	67.77	64.71
KRH30890	Soybean	cytosol	64.1	64.02
AT5G37180.1	Thale cress	cytosol	63.27	63.8
Bra039502.1-P	Field mustard	cytosol	63.15	63.68
CDY38565	Canola	cytosol	63.15	63.0
CDY26996	Canola	cytosol	62.91	62.77
Solyc03g098290.2.1	Tomato	cytosol, nucleus	66.0	62.51
KRH09470	Soybean	cytosol, plastid	66.71	61.2
KRH38924	Soybean	plastid	66.47	60.91
CDX72985	Canola	cytosol	63.98	57.82
CDX96472	Canola	cytosol	63.63	57.43
Bra015995.1-P	Field mustard	cytosol	64.1	57.37
Bra003845.1-P	Field mustard	cytosol	63.74	57.23
CDX68228	Canola	cytosol	63.51	57.02
AT1G73370.1	Thale cress	cytosol	63.51	56.9
CDY11107	Canola	cytosol	63.27	56.81
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	53.67	56.0
Os06t0194900-03	Rice	extracellular	52.01	54.33
Os03t0401300-01	Rice	extracellular	51.9	53.68
Os07t0616800-01	Rice	cytosol	51.18	52.94
Os01t0919400-01	Rice	plasma membrane	19.91	15.5
Os08t0301500-01	Rice	plasma membrane	19.08	15.1
Os02t0184400-01	Rice	endoplasmic reticulum, golgi	17.65	14.74
Os11t0236100-01	Rice	cytosol, plasma membrane	6.4	10.61
Os06t0643800-01	Rice	plasma membrane	0.36	1.63

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	ProteinID:BAS88514.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_1	EnsemblPlantsGene:Os04g0309600
EnsemblPlants:Os04t0309600-01	PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF296	SUPFAM:SSF53756
InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI0000DD8FE5	SEG:seg	:

Description

SUCROSE SYNTHASE 5Similar to Sucrose synthase. (Os04t0309600-01)

Coordinates

chr4:+:14008245..14013443

Molecular Weight (calculated)

96556.2 Da

IEP (calculated)

7.930

GRAVY (calculated)

-0.417

Length

844 amino acids

Sequence
(BLAST)

001: MASKLSFKRM DSIAETMPDA LRQSRYQMKR CFQRYVSKGK RLLKNQQLME ELEKSLDDKV EKEKLVEGFL GYIICSTQEA VVLPPFVAFA VRMNPGIWEY
101: VKVHSDDLSV EGITPSEYLK FKETLYDEKW AKDDNSLEVD FGALDLSTPH LTLPSSIGNG LQFVSKFMSS KLGGKPESMK PLLDYLLTLN YRGEKLMIND
201: TIDTVSKLQT ALLLAEVFVS GLPKYTPYLK FEQRFQEWGL ERGWGDTAER CKETLNCLSE VLQAPDPTNM EKFFSRVPSI FNIVIFSIHG YFGQEKVLGL
301: PDTGGQVVYI LDQVRAMEEE LLQRIKQQGL HVTPKILVLT RLIPDAKGTK CNVELEPVEN TKYSHILRVP FKTEDGKDLR QWVSRFDIYP YLERYAQDSC
401: AKILDILEGK PDLIIGNYTD GNLVASLLSN KLCVTQGTIA HALEKTKYED SDVKWREMDQ KYHFSCQFTA DMISMNTSDF IITSTYQEIA GSKEKPGQYE
501: HHYAFTMPGL CRYATGINVF DPKFNIAAPG ADQSIYFPFT QKQKRLTDLH PQIDELLYSK DDTDEHIGYL ADRNKPIIFS MARLDKVKNK KLRDLVNLVV
601: VAGLLDASQS KDREEIEEIN KMHNLMDRYQ LKGQIRWIKA QTDRVRNGEL YRCIADTKGA FVQPALYEAF GLTVIEAMNC GLPTFATNQG GPAEIIIDGV
701: SGFHVNPIND REAGIKIADF FQKCKEDPSY WNKVSTAGLQ RICECYTWKI YATRVLNMGS TYSFWKTLNK EERQAKQRYL QIFYNVQYRN LAKAMARAGD
801: QQARQTTTGV APSEIVVRPK ERKPQTRMQR ILTRLAGQKP PVSE

Best Arabidopsis Sequence Match ( AT1G73370.1 )
(BLAST)

001: MSSSSQAMLQ KSDSIAEKMP DALKQSRYHM KRCFASFVGG GKKLMKREHL MNEIEKCIED SRERSKILEG LFGYILTCTQ EAAVVPPFVA LAARPNPGFW
101: EYVKVNSGDL TVDEITATDY LKLKESVFDE SWSKDENALE IDFGAIDFTS PRLSLSSSIG KGADYISKFI SSKLGGKSDK LEPLLNYLLR LNHHGENLMI
201: NDDLNTVAKL QKSLMLAVIV VSTYSKHTPY ETFAQRLKEM GFEKGWGDTA ERVKETMIIL SEVLEAPDNG KLDLLFSRLP TVFNVVIFSV HGYFGQQDVL
301: GLPDTGGQVV YILDQVRALE EELLIRINQQ GLGFKPQILV VTRLIPEARG TKCDQELEAI EGTKHSHILR VPFVTNKGVL RQWVSRFDIY PYLERFTQDA
401: TSKILQRLDC KPDLIIGNYT DGNLVASLMA TKLGVTQGTI AHALEKTKYE DSDAKWKELD PKYHFSCQFT ADLIAMNVTD FIITSTYQEI AGSKDRPGQY
501: ESHTAFTMPG LCRVVSGIDV FDPKFNIAAP GADQSVYFPY TEKDKRFTKF HPSIQELLYN EKDNAEHMGY LADREKPIIF SMARLDTVKN ITGLVEWYGK
601: DKRLREMANL VVVAGFFDMS KSNDREEKAE IKKMHDLIEK YKLKGKFRWI AAQTDRYRNS ELYRCIADTK GVFVQPALYE AFGLTVIEAM NCGLPTFATN
701: QGGPAEIIVD GVSGFHIDPN NGDESVTKIG DFFSKCRSDG LYWDNISKGG LKRIYECYTW KIYAEKLLKM GSLYGFWRQV NEDQKKAKKR YIEMLYNLQF
801: KQLTKKVTIP EDKPLPLRLA SLRNLLPKKT TNLGAGSKQK EVTETEKTKQ KSKDGQEQHD VKVGEREVRE GLLAADASER VKKVLESSEE KQKLEKMKIA
901: YGQQHSQGAS PVRNLFWSVV VCLYICYILK QRFFGANSAQ EY

Arabidopsis Description

SUS6Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3K7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.