Factsheet for VIT_17s0053g00700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079728	Potato	cytosol	16.56	85.23
VIT_04s0079g00230.t01	Wine grape	cytosol	70.09	74.97
TraesCS4A01G492600.1	Wheat	cytosol	46.25	74.82
GSMUA_Achr9P21240_001	Banana	cytosol	69.54	74.64
GSMUA_Achr3P13980_001	Banana	cytosol	68.98	74.05
TraesCS7B01G482200.1	Wheat	cytosol	67.99	71.54
TraesCS2A01G406700.1	Wheat	cytosol	68.1	71.41
TraesCS2B01G424300.1	Wheat	cytosol	68.1	71.41
Solyc03g098290.2.1	Tomato	cytosol, nucleus	70.09	71.27
TraesCS2D01G403600.1	Wheat	cytosol	68.1	71.25
TraesCS7D01G552800.1	Wheat	cytosol	67.66	71.2
Os04t0249500-00	Rice	cytosol	66.23	71.09
TraesCS7A01G557600.1	Wheat	cytosol	67.44	70.96
HORVU7Hr1G120520.1	Barley	cytosol	67.44	70.8
Os04t0309600-01	Rice	cytosol, plasma membrane	65.89	70.73
Os02t0831500-01	Rice	plastid	64.57	69.15
OQU77175	Sorghum	plastid	68.32	69.01
HORVU6Hr1G094880.6	Barley	cytosol	65.56	68.99
TraesCSU01G082000.1	Wheat	plastid	65.56	68.43
KRH09470	Soybean	cytosol, plastid	69.32	68.26
TraesCS6D01G403800.1	Wheat	cytosol	65.12	68.05
TraesCS6B01G466600.1	Wheat	cytosol	65.12	67.97
KRH38924	Soybean	plastid	69.09	67.97
Zm00001d051837_P002	Maize	cytosol	59.6	63.45
KXG31429	Sorghum	cytosol	60.38	63.38
VIT_12s0057g00130.t01	Wine grape	cytosol	11.81	60.45
VIT_00s1562g00010.t01	Wine grape	cytosol	11.7	59.89
Zm00001d050151_P001	Maize	cytosol	8.94	59.12
Zm00001d014119_P001	Maize	cytosol	9.82	58.17
VIT_10s0071g00070.t01	Wine grape	cytosol	5.19	58.02
VIT_07s0005g00750.t01	Wine grape	cytosol	50.22	56.1
VIT_05s0077g01930.t01	Wine grape	cytosol	49.23	55.2
VIT_11s0016g00470.t01	Wine grape	cytosol	48.9	54.36
VIT_10s0071g00080.t01	Wine grape	cytosol	4.19	49.35
VIT_18s0075g00350.t01	Wine grape	cytosol	5.08	32.39
VIT_11s0118g00200.t01	Wine grape	cytosol	18.98	16.35
VIT_05s0029g01140.t01	Wine grape	cytosol	18.1	15.37
VIT_04s0008g05730.t01	Wine grape	cytosol	17.66	15.12
VIT_18s0089g00410.t01	Wine grape	cytosol	17.0	15.04
VIT_18s0075g00340.t01	Wine grape	plastid	0.44	2.04

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	EntrezGene:100252799	wikigene:100252799	MapMan:3.1.4.2	Gene3D:3.10.450.330
Gene3D:3.40.50.2000	EMBL:AM475935	ProteinID:CAN64012	ProteinID:CAN64012.1	ProteinID:CBI35298	ProteinID:CBI35298.3
UniProt:D7TXS3	EMBL:FN596258	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005975
GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_1	EntrezGene:LOC100252799	wikigene:LOC100252799
PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF296	SUPFAM:SSF53756	InterPro:Sucrose_synth
InterPro:Sucrose_synthase_pln/cyn	TIGR:TC55473	TIGRFAMs:TIGR02470	TMHMM:TMhelix	UniParc:UPI0001BE44CC	ArrayExpress:VIT_17s0053g00700
EnsemblPlantsGene:VIT_17s0053g00700	EnsemblPlants:VIT_17s0053g00700.t01	unigene:Vvi.19334	RefSeq:XP_002270861	RefSeq:XP_002270861.1	RefSeq:XP_010663929.1
SEG:seg	:	:	:	:	:

Description

Sucrose synthase [Source:UniProtKB/TrEMBL;Acc:D7TXS3]

Coordinates

chr17:+:15994838..15999374

Molecular Weight (calculated)

102725.0 Da

IEP (calculated)

7.755

GRAVY (calculated)

-0.359

Length

906 amino acids

Sequence
(BLAST)

001: MASSSAPVIK QQDIADTMPD ALKQSRYHMK RCFARFVGSG RRLMKYRHIM EEIEKSIEDK AERSRVMDGL LGYILNTTQE AAVVPPYVAF AVRPSPGLWE
101: FVKVSADDLG VDGITSAEYL KFKETIFDEN WATDENTLEI DFGAFDYSTP HLTLNSSIGN GLNYVSKFMT SKLSGSSENA KPLVEYLLAM NHQGESLMIN
201: EMLNTVSKLQ TALIVAEVFV SSLPKDTPYQ SFEQRLKDWG FEKGWGDSAE RVKDTMRTLS EVLQAPDPMK MELLFSRLPN MFNIVVFSPH GYFGQADVLG
301: LPDTGGQVVY ILDQVKALEE ELLHRIKQQG LIVKPQILVV TRLIPDARGT KCDQEIEPVL NTKHSHILRV PFRTENGVLR QWVSRFDIYP YLERYAQDAS
401: AKILAHMECK PDLIIGNYTD GNMVASLMAS KLGVTQGTIA HALEKTKYED SDVKWKELDG KYHFSCQFTA DMFAMNATDF IITSTFQEIA GSKDRPGQYE
501: NHAAFTMPGL CRVVSGINVF DTKFNIAAPG ADQSVYFPYM EKQKRLTSFH PAIEELLYSK EDNKEHLGYL SDRKKPIIFS MARLDTVKNI TGLTEWYGKN
601: KRLRSLVNLV VVAGFFDPSK SKDREEIAEI KKMHSLIEKY QLKGQLRWIA AQNDRNRNGE LYRCIADTKG AFVQPALYEA FGLTVIEAMN CGLPTFATNQ
701: GGPAEIIFDG VSGFHIDPSN GDESSDKIAD FFEKCKTDSE YWNKISTAGL QRIYECYTWK IYATKVLNMG STYGFWRQLN KDQKNAKNRY LQLFYNLQFR
801: KLAKGVPILN EEPREEPQQP AATAITKPQQ PAPTEGAKPR PSAPTTAPKP QPAARRPQSG VQRVNEGLDQ KQPGLPTRIR AFCPWLWWFF IINISLFLIW
901: YLLMKL

Best Arabidopsis Sequence Match ( AT1G73370.1 )
(BLAST)

001: MSSSSQAMLQ KSDSIAEKMP DALKQSRYHM KRCFASFVGG GKKLMKREHL MNEIEKCIED SRERSKILEG LFGYILTCTQ EAAVVPPFVA LAARPNPGFW
101: EYVKVNSGDL TVDEITATDY LKLKESVFDE SWSKDENALE IDFGAIDFTS PRLSLSSSIG KGADYISKFI SSKLGGKSDK LEPLLNYLLR LNHHGENLMI
201: NDDLNTVAKL QKSLMLAVIV VSTYSKHTPY ETFAQRLKEM GFEKGWGDTA ERVKETMIIL SEVLEAPDNG KLDLLFSRLP TVFNVVIFSV HGYFGQQDVL
301: GLPDTGGQVV YILDQVRALE EELLIRINQQ GLGFKPQILV VTRLIPEARG TKCDQELEAI EGTKHSHILR VPFVTNKGVL RQWVSRFDIY PYLERFTQDA
401: TSKILQRLDC KPDLIIGNYT DGNLVASLMA TKLGVTQGTI AHALEKTKYE DSDAKWKELD PKYHFSCQFT ADLIAMNVTD FIITSTYQEI AGSKDRPGQY
501: ESHTAFTMPG LCRVVSGIDV FDPKFNIAAP GADQSVYFPY TEKDKRFTKF HPSIQELLYN EKDNAEHMGY LADREKPIIF SMARLDTVKN ITGLVEWYGK
601: DKRLREMANL VVVAGFFDMS KSNDREEKAE IKKMHDLIEK YKLKGKFRWI AAQTDRYRNS ELYRCIADTK GVFVQPALYE AFGLTVIEAM NCGLPTFATN
701: QGGPAEIIVD GVSGFHIDPN NGDESVTKIG DFFSKCRSDG LYWDNISKGG LKRIYECYTW KIYAEKLLKM GSLYGFWRQV NEDQKKAKKR YIEMLYNLQF
801: KQLTKKVTIP EDKPLPLRLA SLRNLLPKKT TNLGAGSKQK EVTETEKTKQ KSKDGQEQHD VKVGEREVRE GLLAADASER VKKVLESSEE KQKLEKMKIA
901: YGQQHSQGAS PVRNLFWSVV VCLYICYILK QRFFGANSAQ EY

Arabidopsis Description

SUS6Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q3K7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.