Factsheet for VIT_11s0016g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19379	Soybean	cytosol	83.19	84.22
KRH02557	Soybean	cytosol, endoplasmic reticulum, extracellular, mitochondrion	82.94	83.98
HORVU0Hr1G019020.1	Barley	cytosol	15.34	83.89
PGSC0003DMT400007505	Potato	cytosol	81.72	82.73
KRH12615	Soybean	endoplasmic reticulum	81.6	82.51
Solyc12g009300.1.1	Tomato	nucleus	80.98	81.99
KRH37557	Soybean	endoplasmic reticulum	81.47	81.98
CDX88838	Canola	endoplasmic reticulum, golgi	74.48	81.7
Solyc07g042550.2.1	Tomato	extracellular	80.25	81.24
PGSC0003DMT400035262	Potato	cytosol	80.49	81.19
CDY16569	Canola	cytosol	80.12	81.12
CDX92432	Canola	cytosol	79.75	80.75
AT3G43190.1	Thale cress	cytosol	80.0	80.69
Bra002332.1-P	Field mustard	cytosol	77.79	80.66
Bra006578.1-P	Field mustard	cytosol	79.63	80.52
CDX70945	Canola	cytosol	79.39	80.27
AT5G20830.1	Thale cress	cytosol	79.26	79.95
GSMUA_Achr6P10890_001	Banana	unclear	77.3	77.3
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	76.32	76.23
GSMUA_Achr2P21870_001	Banana	cytosol	76.07	76.07
GSMUA_Achr3P01900_001	Banana	mitochondrion	75.95	75.86
KXG19528	Sorghum	mitochondrion	74.6	75.81
GSMUA_Achr7P19810_001	Banana	mitochondrion	75.83	75.74
Zm00001d047253_P003	Maize	cytosol	75.58	75.49
OQU92441	Sorghum	cytosol	75.58	75.49
HORVU7Hr1G033230.2	Barley	mitochondrion	74.85	75.4
VIT_10s0071g00070.t01	Wine grape	cytosol	7.48	75.31
TraesCS7A01G158900.1	Wheat	golgi, nucleus	74.6	75.25
Os06t0194900-03	Rice	extracellular	74.36	75.0
HORVU5Hr1G050660.1	Barley	cytosol	3.68	75.0
HORVU2Hr1G030870.1	Barley	plasma membrane	74.85	74.75
Os07t0616800-01	Rice	cytosol	74.72	74.63
HORVU7Hr1G007220.8	Barley	cytosol	74.6	74.6
Os03t0401300-01	Rice	extracellular	74.6	74.51
TraesCS4A01G446700.1	Wheat	cytosol	74.48	74.48
TraesCS7A01G040900.2	Wheat	cytosol	74.48	74.48
TraesCS7D01G036600.2	Wheat	golgi	74.48	74.48
VIT_00s1562g00010.t01	Wine grape	cytosol	16.07	74.01
VIT_12s0057g00130.t01	Wine grape	cytosol	16.07	74.01
Zm00001d045042_P014	Maize	cytosol, mitochondrion	74.6	73.97
TraesCS7B01G063400.1	Wheat	mitochondrion	74.6	73.61
TraesCS7D01G159800.1	Wheat	mitochondrion	74.48	73.49
TraesCS2A01G168200.1	Wheat	golgi, unclear	74.85	73.41
TraesCS2B01G194200.1	Wheat	golgi	74.72	73.29
TraesCS2D01G175600.1	Wheat	golgi, unclear	74.6	73.08
VIT_07s0005g00750.t01	Wine grape	cytosol	71.29	71.64
Solyc07g042520.2.1	Tomato	cytosol, extracellular	70.06	71.11
PGSC0003DMT400035264	Potato	cytosol	69.69	70.73
VIT_05s0077g01930.t01	Wine grape	cytosol	69.33	69.93
VIT_10s0071g00080.t01	Wine grape	cytosol	5.4	57.14
VIT_04s0079g00230.t01	Wine grape	cytosol	54.85	52.77
VIT_17s0053g00700.t01	Wine grape	cytosol	54.36	48.9
VIT_18s0075g00350.t01	Wine grape	cytosol	5.77	33.1
VIT_05s0029g01140.t01	Wine grape	cytosol	21.6	16.49
VIT_04s0008g05730.t01	Wine grape	cytosol	21.23	16.35
VIT_11s0118g00200.t01	Wine grape	cytosol	21.1	16.35
VIT_18s0089g00410.t01	Wine grape	cytosol	19.39	15.43
VIT_18s0075g00340.t01	Wine grape	plastid	0.61	2.55

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	EntrezGene:100249279	wikigene:100249279	MapMan:3.1.4.2	Gene3D:3.10.450.330
Gene3D:3.40.50.2000	EMBL:AM446211	ProteinID:CAN82840	ProteinID:CAN82840.1	ProteinID:CCB51367	ProteinID:CCB51367.1
UniProt:F6HGZ9	EMBL:FN595756	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757
InterPro:Glyco_trans_1	EntrezGene:LOC100249279	wikigene:LOC100249279	PFAM:PF00534	PFAM:PF00862	PANTHER:PTHR12526
PANTHER:PTHR12526:SF391	SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn	TIGR:TC59157	TIGR:TC59920
TIGR:TC62012	TIGRFAMs:TIGR02470	UniParc:UPI00021081DE	ArrayExpress:VIT_11s0016g00470	EnsemblPlantsGene:VIT_11s0016g00470	EnsemblPlants:VIT_11s0016g00470.t01
unigene:Vvi.3505	RefSeq:XP_002275155	RefSeq:XP_002275155.1	SEG:seg	:	:

Description

Sucrose synthase [Source:UniProtKB/TrEMBL;Acc:F6HGZ9]

Coordinates

chr11:+:489955..494383

Molecular Weight (calculated)

93609.0 Da

IEP (calculated)

6.550

GRAVY (calculated)

-0.247

Length

815 amino acids

Sequence
(BLAST)

001: MADGVLTGVH SLRARVDETL TAHRNEILSF LSRIEGHGKG ILQPHQLLAE FEALPEVNRK KLSDGPFGDI LKSIQEAIVL PPWIAFAVRP RPGVWEYIRV
101: NVSALVVEEL LVPEYLHFKE ELVDGSCNGN FVLELDFEPF TASVPRPTLS KSIGNGVEFL NRHLSAKMFH DKDSMQPLLD FLRTHQYKGK TMMLNDRIQN
201: LDTLQFVLRK AEEYLSSQAP ETPYPEFEHK FQEIGLERGW GDTAERVLEM IHLLLDLLEA PDPCTLEQFL GRIPMVFNVV ILSPHGYFAQ DNVLGYPDTG
301: GQVVYILDQV RAMETEMLLR IKQQGLDITP KIIIVTRLLP DAVGTTCNQR IEKVYGTEHS IILRVPFRTE KGIVRKWISR FEVWPYLETY TEDVAKELAT
401: ELQTKPDFII GNYSDGNIVA SLLAHKLGVT QCTIAHALEK TKYPESDIYW KKLEDKYHFS CQFTADLIAM NHTDFIITST FQEIAGSKDT VGQYESHTGF
501: TMPGLYRVVH GIDVFDPKFN IVSPGADMTI YFSYTEEKMR LKALHPEIEE LLFSPVENKE HLCVLKDRNK PIIFSMARLD RVKNLTGLVE WYGKNTRLRE
601: LVNLVVVGGD RRKESKDLEE QSEMKKMHEL IETYKLNGQF RWISSQMDRV RNGELYRYIA DTKGVFVQPA FYEAFGLTVV EAMTCGLPTF ATCNGGPAEI
701: IVHGKSGFHI DPYHGDKAAE LLANFFEKCK ADPTHWEKIS KAGLKRIEEK YTWKIYSERL LTLAGVYGFW KYVSNLDRRE TRRYLEMFYA LKYRKLVSPS
801: PLSLLNQFLW LWKSS

Best Arabidopsis Sequence Match ( AT3G43190.2 )
(BLAST)

001: MANAERVITR VHSQRERLDA TLVAQKNEVF ALLSRVEAKG KGILQHHQII AEFEAMPLET QKKLKGGAFF EFLRSAQEAI VLPPFVALAV RPRPGVWEYV
101: RVNLHDLVVE ELQASEYLQF KEELVDGIKN GNFTLELDFE PFNAAFPRPT LNKYIGDGVE FLNRHLSAKL FHDKESLHPL LKFLRLHSHE GKTLMLNNRI
201: QNLNTLQHNL RKAEEYLMEL KPETLYSEFE HKFQEIGLER GWGDTAERVL NMIRLLLDLL EAPDPCTLEN FLGRIPMVFN VVILSPHGYF AQDNVLGYPD
301: TGGQVVYILD QVRALETEML QRIKQQGLNI TPRILIITRL LPDAAGTTCG QRLEKVYGSQ YCDILRVPFR TEKGIVRKWI SRFEVWPYLE TFTEDVAAEI
401: SKELQGKPDL IIGNYSDGNL VASLLAHKLG VTQCTIAHAL EKTKYPDSDI YWKKLDEKYH FSCQFTADLI AMNHTDFIIT STFQEIAGSK DTVGQYESHR
501: SFTLPGLYRV VHGIDVFDPK FNIVSPGADM SIYFAYTEEK RRLTAFHLEI EELLYSDVEN EEHLCVLKDK KKPIIFTMAR LDRVKNLSGL VEWYGKNTRL
601: RELVNLVVVG GDRRKESQDN EEKAEMKKMY ELIEEYKLNG QFRWISSQMN RVRNGELYRY ICDTKGAFVQ PALYEAFGLT VVEAMTCGLP TFATCNGGPA
701: EIIVHGKSGF HIDPYHGDKA AESLADFFTK CKHDPSHWDQ ISLGGLERIQ EKYTWQIYSQ RLLTLTGVYG FWKHVSNLDR LESRRYLEMF YALKYRPLAQ
801: AVPLAHEE

Arabidopsis Description

SUS4Sucrose synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.