Factsheet for VIT_18s0089g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0075g00340.t01	Wine grape	plastid	18.07	94.39
VIT_18s0075g00350.t01	Wine grape	cytosol	11.91	85.92
PGSC0003DMT400049042	Potato	cytosol	11.91	85.31
KRH56446	Soybean	cytosol	76.46	75.51
KRH62455	Soybean	cytosol	56.05	73.87
Solyc11g045110.1.1	Tomato	cytosol	71.88	73.6
Bra033195.1-P	Field mustard	cytosol	74.9	73.26
CDY41124	Canola	cytosol	74.71	73.07
CDX94270	Canola	nucleus	33.59	72.73
AT4G10120.3	Thale cress	cytosol	73.63	71.81
PGSC0003DMT400049047	Potato	golgi, mitochondrion, plastid	38.87	71.45
GSMUA_Achr6P17480_001	Banana	nucleus	66.89	65.68
VIT_05s0029g01140.t01	Wine grape	cytosol	60.94	58.48
VIT_04s0008g05730.t01	Wine grape	cytosol	55.96	54.16
VIT_11s0118g00200.t01	Wine grape	cytosol	55.57	54.09
VIT_10s0071g00080.t01	Wine grape	cytosol	1.86	24.68
VIT_05s0077g01930.t01	Wine grape	cytosol	15.62	19.8
VIT_11s0016g00470.t01	Wine grape	cytosol	15.43	19.39
VIT_07s0005g00750.t01	Wine grape	cytosol	15.23	19.24
VIT_04s0079g00230.t01	Wine grape	cytosol	15.82	19.13
VIT_12s0057g00130.t01	Wine grape	cytosol	3.22	18.64
VIT_00s1562g00010.t01	Wine grape	cytosol	3.22	18.64
VIT_10s0071g00070.t01	Wine grape	cytosol	1.46	18.52
VIT_17s0053g00700.t01	Wine grape	cytosol	15.04	17.0

Protein Annotations

KEGG:00500+2.4.1.14	EntrezGene:100232974	wikigene:100232974	MapMan:3.1.2.7	Gene3D:3.40.50.1000	Gene3D:3.40.50.2000
Gene3D:3.90.1070.10	ProteinID:AAW82754	ProteinID:AAW82754.1	EMBL:AY899999	ProteinID:CCB44146	ProteinID:CCB44146.1
UniProt:F6GW11	EMBL:FN594956	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005975	GO:GO:0005985	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016157
GO:GO:0016740	GO:GO:0016757	GO:GO:0043531	GO:GO:0046524	InterPro:Glyco_trans_1	InterPro:HAD_sf
InterPro:IPR023214	EntrezGene:LOC100232974	wikigene:LOC100232974	PFAM:PF00534	PFAM:PF00862	PFAM:PF05116
PANTHER:PTHR12526	PANTHER:PTHR12526:SF358	InterPro:SPP_N	InterPro:SPS_C	SUPFAM:SSF53756	InterPro:Sucrose_synth
InterPro:SucrsPsyn_pln	TIGR:TC60623	TIGRFAMs:TIGR02468	UniParc:UPI00021094F4	ArrayExpress:VIT_18s0089g00410	EnsemblPlantsGene:VIT_18s0089g00410
EnsemblPlants:VIT_18s0089g00410.t01	unigene:Vvi.733	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:28209036..28216160

Molecular Weight (calculated)

115669.0 Da

IEP (calculated)

6.859

GRAVY (calculated)

-0.420

Length

1024 amino acids

Sequence
(BLAST)

0001: MAGNEWINGY LEAILDAGSS RNGLRVVEDG DEKSNSKNNG SRRRRFVFNP TKYFVEEVVN SFDESDLHRT WIKVIATRNS RDRSNRLENM CWRIWHLARK
0101: KKQIAWDDAQ RLTKRRLERE QGRHDAADDL SELSEGEKEK GDPNQIEPVK EQMTRINSDM HIWSDDDKSR HLYIILISIH GLVRGENMEL GRDSDTGGQV
0201: KYVVELARAL ANTKGVYRVD LLTRQITSTE VDSSYGEPIE MLSCPSDGGG SCGAYIIRIP CGPRDRYIPK ESLWPYIPEF VDGALGHIVN MARALGEQVD
0301: AGKPIWPYVI HGHYADAGEV AAHLSGALNV PMVLTGHSLG RNKFEQLLKQ GRLSREDINS TYKIMRRIEA EELGLDAAEM VVTSTRQEIE EQWGLYDGFD
0401: LKLERKLRVR RRRGVSCFGR NMPRMVVIPP GMDFSYVKIQ DSEGDSDLKS LIGSDKTQNK RHLPPIWSEI MRFFTNPHKP MILALSRPDP KKNVTTLLKA
0501: FGECRQLREL ANLTLILGNR DDIEEMSNSS SVVLTTALKF IDKYDLYGQV AYPKHHKQSE VPEIYRLAAK TKGVFINPAL VEPFGLTLIE AAAYGLPVVA
0601: TKNGGPVDII KALNNGLLVD PHDQKGIADA LLKLLADKNL WLECRKNGLK NIHRFSWPEH CRNYLSHVEH CRNRHPNTHL GIIPSIEEPM SDSLRDLEDL
0701: SLKFSVDGDF KLNGELDAAT RQKELIEALT RMASSNGNSS VSYHSGRRQG LFVIAADCYD SNGDCTERLP AIIKNVMKST SSGLNLIGFV LLTGLSLQEI
0801: LEKLRCCQVN LEEIDALVCN SGSEIYYPWR DLIADLEYEA HVEYRWPGEN VRSVVTRLAQ GEGGAEDDIV EYAGVCSTRC YSYGVKPGAK TRRIDDLHQR
0901: MRMRGFRCNL VYTHATSRLN VVPLFASRAQ ALRYLSVRWG IDLSKMVVFV GEKGDTDYED LLVGLHKTII LRGLVEYGSE KLLRNEESFK REDMIPQDSP
1001: NIAFVEEGYE ALNISAALLT LGIK

Best Arabidopsis Sequence Match ( AT4G10120.1 )
(BLAST)

0001: MARNDWINSY LEAILDVGTS KKKRFESNSK IVQKLGDINS KDHQEKVFGD MNGKDHQEKV FSPIKYFVEE VVNSFDESDL YKTWIKVIAT RNTRERSNRL
0101: ENICWRIWHL ARKKKQIVWD DGVRLSKRRI EREQGRNDAE EDLLSELSEG EKDKNDGEKE KSEVVTTLEP PRDHMPRIRS EMQIWSEDDK SSRNLYIVLI
0201: SMHGLVRGEN MELGRDSDTG GQVKYVVELA RALANTEGVH RVDLLTRQIS SPEVDYSYGE PVEMLSCPPE GSDSCGSYII RIPCGSRDKY IPKESLWPHI
0301: PEFVDGALNH IVSIARSLGE QVNGGKPIWP YVIHGHYADA GEVAAHLAGA LNVPMVLTGH SLGRNKFEQL LQQGRITRED IDRTYKIMRR IEAEEQSLDA
0401: AEMVVTSTRQ EIDAQWGLYD GFDIKLERKL RVRRRRGVSC LGRYMPRMVV IPPGMDFSYV LTQDSQEPDG DLKSLIGPDR NQIKKPVPPI WSEIMRFFSN
0501: PHKPTILALS RPDHKKNVTT LVKAFGECQP LRELANLVLI LGNRDDIEEM PNSSSVVLMN VLKLIDQYDL YGQVAYPKHH KQSEVPDIYR LAAKTKGVFI
0601: NPALVEPFGL TLIEAAAYGL PIVATRNGGP VDIVKALNNG LLVDPHDQQA ISDALLKLVA NKHLWAECRK NGLKNIHRFS WPEHCRNYLS HVEHCRNRHP
0701: TSSLDIMKVP EELTSDSLRD VDDISLRFST EGDFTLNGEL DAGTRQKKLV DAISQMNSMK GCSAAIYSPG RRQMLFVVAV DSYDDNGNIK ANLNEIIKNM
0801: IKAADLTSGK GKIGFVLASG SSLQEVVDIT QKNLINLEDF DAIVCNSGSE IYYPWRDMMV DADYETHVEY KWPGESIRSV ILRLICTEPA AEDDITEYAS
0901: SCSTRCYAIS VKQGVKTRRV DDLRQRLRMR GLRCNIVYTH AATRLNVIPL CASRIQALRY LSIRWGIDMS KTVFFLGEKG DTDYEDLLGG LHKTIILKGV
1001: VGSDSEKLLR SEENFKREDA VPQESPNISY VKENGGSQEI MSTLEAYGIK

Arabidopsis Description

SPS4Probable sucrose-phosphate synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JLK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.