CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g00130.t01	Wine grape	cytosol	18.7	84.75
VIT_00s1562g00010.t01	Wine grape	cytosol	18.58	84.18
VIT_05s0077g01930.t01	Wine grape	cytosol	81.3	80.69
VIT_10s0071g00070.t01	Wine grape	cytosol	7.98	79.01
GSMUA_Achr3P08200_001	Banana	mitochondrion	17.71	78.45
GSMUA_Achr8P22470_001	Banana	cytosol	77.43	76.76
AT5G49190.1	Thale cress	cytosol	77.18	76.7
CDX86250	Canola	cytosol	74.81	76.14
Bra037432.1-P	Field mustard	cytosol	76.43	75.96
CDX85398	Canola	cytosol	76.31	75.84
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	75.94	75.0
GSMUA_Achr3P08190_001	Banana	cytosol	58.23	74.84
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	75.69	74.75
EER92301	Sorghum	cytosol	75.06	74.41
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	74.94	74.29
TraesCS4D01G169800.1	Wheat	cytosol	74.31	73.67
HORVU4Hr1G049500.3	Barley	cytosol	74.31	73.58
Zm00001d029091_P003	Maize	cytosol	75.44	73.42
TraesCS4A01G140000.1	Wheat	cytosol, golgi, unclear	73.69	73.05
TraesCS4B01G167500.1	Wheat	cytosol	73.44	72.81
Zm00001d029087_P002	Maize	cytosol	75.44	71.26
KRH19379	Soybean	cytosol	67.96	67.7
KRH02557	Soybean	cytosol, endoplasmic reticulum, extracellular, mitochondrion	67.83	67.58
KRH12615	Soybean	endoplasmic reticulum	66.96	66.63
KRH37557	Soybean	endoplasmic reticulum	67.08	66.42
Zm00001d010801_P001	Maize	cytosol	19.83	64.9
VIT_10s0071g00080.t01	Wine grape	cytosol	5.99	62.34
KRH72916	Soybean	cytosol	54.11	51.67
KRH17270	Soybean	cytosol	54.11	51.67
KRH30890	Soybean	cytosol	53.62	50.89
KRH09470	Soybean	cytosol, plastid	53.99	47.07
KRH38924	Soybean	plastid	53.49	46.58
KRH03629	Soybean	endoplasmic reticulum	22.19	16.81
KRH20178	Soybean	nucleus	21.95	16.62
KRH14493	Soybean	cytosol	20.82	15.71
KRH62455	Soybean	cytosol	15.21	15.7
KRG98934	Soybean	cytosol	20.57	15.67
KRH46034	Soybean	cytosol	20.57	15.64
KRH56446	Soybean	cytosol	19.08	14.75

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	EntrezGene:100788717	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000
EMBL:ACUP02009265	EnsemblPlantsGene:GLYMA_15G151000	GO:GO:0000003	GO:GO:0001666	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005975	GO:GO:0005982	GO:GO:0005985	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009505	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0010431
GO:GO:0016020	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757	GO:GO:0030312	InterPro:Glyco_trans_1
UniProt:K7MBG3	EnsemblPlants:KRH12090	ProteinID:KRH12090	ProteinID:KRH12090.1	PFAM:PF00534	PFAM:PF00862
PANTHER:PTHR12526	PANTHER:PTHR12526:SF509	MetaCyc:PWY-3801	SUPFAM:SSF53756	InterPro:Sucrose_synth	InterPro:Sucrose_synthase_pln/cyn
TIGRFAMs:TIGR02470	UniParc:UPI000233B1B7	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:12497421..12504514

Molecular Weight (calculated)

91573.2 Da

IEP (calculated)

6.175

GRAVY (calculated)

-0.211

Length

802 amino acids

Sequence
(BLAST)

001: MPATSVRERV LDTLSRYRNE FISLLSRYVA GGKGILQPHD LLYEVEKLLE EDEGMQKLKD SPFVKELESA KEAIVLPPFV SIALRPRPGV WEYVRVDAFE
101: LSVDNLSVAE YLRLKEELVD GQCTDKYVLE LDFEPFNVTL PRPTRSSSIG DGVQFLNRHL SSFMFRSKES LEPLLAFLRT HRYDGHAMML NDRIYNLSKL
201: QSSLAKAEEL LSRLLPNAPY SDFEYELQGL GFERGWGDTA ERVSEMVHLL LEILQAPDPN TLESFLGRIP MVFNVVVVSP HGYFGQANIL GLPDTGGQLV
301: YILDQVRALE NEMLIKIQKQ GLDVSPKILI VTRLIPEAKG TTCNQRLERV SGTEHSYILR VPFRTKNGIL RKWISRFDMW PYLETFAEDA SHEIAGELQG
401: IPDLIIGNCS DGNLVATLLS YKLGITQCNI AHALEKTKHP DSDIYWKKYE DKYHFTCQFT ADLIAMNNAD FIITSTYQEI AGSKNNVGQY ESYTAFTLPG
501: LYRVVHGIDV FDPKFNIVSP GADMCIYFPY SDRERRLTSL HGSIEKLVYG AEQNEEHIGL LNDRSKPIIF SMARIDPVKN ITGLVECFGK SSKLRELVNL
601: VVVGGYIDVQ KSTDIEEMRE IEKMHNLIEE YNLHGQFRWI KAQMNRARNG ELYRYIADVK GAFVQPALYE AFGLTVVEAM TCGLPTFATC HGGPAEIIEH
701: GVSGFHIEPH HPDHVAAILI NFFEQCQSDP GYWNKISDAG LRRIHERYTW KIYSERLLTL AGVYGFWKHV SKLEKRETRR YLEMFYILKF RDLVKSIPLA
801: VN

Best Arabidopsis Sequence Match ( AT5G49190.1 )
(BLAST)

001: MPTGRFETMR EWVYDAISAQ RNELLSLFSR YVAQGKGILQ SHQLIDEFLK TVKVDGTLED LNKSPFMKVL QSAEEAIVLP PFVALAIRPR PGVREYVRVN
101: VYELSVDHLT VSEYLRFKEE LVNGHANGDY LLELDFEPFN ATLPRPTRSS SIGNGVQFLN RHLSSIMFRN KESMEPLLEF LRTHKHDGRP MMLNDRIQNI
201: PILQGALARA EEFLSKLPLA TPYSEFEFEL QGMGFERGWG DTAQKVSEMV HLLLDILQAP DPSVLETFLG RIPMVFNVVI LSPHGYFGQA NVLGLPDTGG
301: QVVYILDQVR ALENEMLLRI QKQGLEVIPK ILIVTRLLPE AKGTTCNQRL ERVSGTEHAH ILRIPFRTEK GILRKWISRF DVWPYLETFA EDASNEISAE
401: LQGVPNLIIG NYSDGNLVAS LLASKLGVIQ CNIAHALEKT KYPESDIYWR NHEDKYHFSS QFTADLIAMN NADFIITSTY QEIAGSKNNV GQYESHTAFT
501: MPGLYRVVHG IDVFDPKFNI VSPGADMTIY FPYSDKERRL TALHESIEEL LFSAEQNDEH VGLLSDQSKP IIFSMARLDR VKNLTGLVEC YAKNSKLREL
601: ANLVIVGGYI DENQSRDREE MAEIQKMHSL IEQYDLHGEF RWIAAQMNRA RNGELYRYIA DTKGVFVQPA FYEAFGLTVV ESMTCALPTF ATCHGGPAEI
701: IENGVSGFHI DPYHPDQVAA TLVSFFETCN TNPNHWVKIS EGGLKRIYER YTWKKYSERL LTLAGVYAFW KHVSKLERRE TRRYLEMFYS LKFRDLANSI
801: PLATDEN

Arabidopsis Description

SUS2Sucrose synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q00917]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.