CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, endoplasmic reticulum

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96468
KRH68215

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	KRG96468	AT4G02280.1	21798944
AT4G02280.1	KRH68215	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	97.04	97.04
VIT_07s0005g00750.t01	Wine grape	cytosol	83.37	83.48
GSMUA_Achr8P22470_001	Banana	cytosol	82.27	82.57
AT4G02280.1	Thale cress	mitochondrion	81.65	81.95
Bra036282.1-P	Field mustard	cytosol, mitochondrion	81.53	81.63
CDY22042	Canola	cytosol, mitochondrion	81.4	81.5
CDY52781	Canola	mitochondrion	81.16	81.26
Solyc09g098590.2.1	Tomato	cytosol	80.3	80.3
PGSC0003DMT400017087	Potato	cytosol	80.17	80.27
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	79.56	79.85
EER92301	Sorghum	cytosol	79.43	79.73
GSMUA_Achr3P08190_001	Banana	cytosol	61.08	79.49
TraesCS4D01G169800.1	Wheat	cytosol	78.82	79.11
TraesCS4A01G140000.1	Wheat	cytosol, golgi, unclear	78.45	78.74
HORVU4Hr1G049500.3	Barley	cytosol	78.33	78.52
GSMUA_Achr3P08200_001	Banana	mitochondrion	17.49	78.45
TraesCS4B01G167500.1	Wheat	cytosol	77.96	78.24
Zm00001d029091_P003	Maize	cytosol	78.94	77.79
KRH12090	Soybean	endoplasmic reticulum	74.75	75.69
Zm00001d029087_P002	Maize	cytosol	78.82	75.38
KRH19379	Soybean	cytosol	70.57	71.18
KRH12615	Soybean	endoplasmic reticulum	70.44	70.97
KRH02557	Soybean	cytosol, endoplasmic reticulum, extracellular, mitochondrion	70.2	70.81
KRH37557	Soybean	endoplasmic reticulum	69.83	70.0
Zm00001d010801_P001	Maize	cytosol	20.32	67.35
KRH17270	Soybean	cytosol	55.91	54.05
KRH72916	Soybean	cytosol	55.79	53.93
KRH30890	Soybean	cytosol	54.19	52.07
KRH09470	Soybean	cytosol, plastid	55.3	48.8
KRH38924	Soybean	plastid	55.3	48.75
KRH20178	Soybean	nucleus	22.04	16.9
KRH03629	Soybean	endoplasmic reticulum	21.92	16.81
KRH62455	Soybean	cytosol	15.89	16.6
KRH14493	Soybean	cytosol	21.18	16.18
KRH56446	Soybean	cytosol	20.07	15.72
KRG98934	Soybean	cytosol	20.32	15.67
KRH46034	Soybean	cytosol	20.2	15.54

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	EntrezGene:100793371	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000
EMBL:ACUP02002104	EnsemblPlantsGene:GLYMA_03G216300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005985
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740	GO:GO:0016757
InterPro:Glyco_trans_1	UniProt:K7KGC7	EnsemblPlants:KRH68215	ProteinID:KRH68215	ProteinID:KRH68215.1	PFAM:PF00534
PFAM:PF00862	PANTHER:PTHR12526	PANTHER:PTHR12526:SF509	MetaCyc:PWY-3801	SUPFAM:SSF53756	InterPro:Sucrose_synth
InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI0002339BEE	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:42037566..42043806

Molecular Weight (calculated)

92311.5 Da

IEP (calculated)

6.025

GRAVY (calculated)

-0.252

Length

812 amino acids

Sequence
(BLAST)

001: MSTQPKLGRI SSIRDRVEDT LSAHRNELIS LLSRYVAQGK GILQPHNLID ELDNIPGDDE AIVDLKNGPF GEIVKSAKEA IVLPPFVAIA VRPRPGVWEY
101: VRVNVSDLSV EQLSISEYLS FKEELVDGKI NENFVLELDF EPFNATFPRP TRSASIGNGV QFLNRHLSSI MFRNKDSLQP LLDFLRAHKY KGHALMINDR
201: VQTISNLQSA LAKTEDYLSK LASDTLYSEF EYVLQGMGFE RGWGDTAERV LEMMHLLLDI LQAPDPSTLE TFLGRVPMVF NVVILSPHGY FGQANVLGLP
301: DTGGQVVYIL DQVRALENEM LLRIKKQGLD FTPRILIVTR LIPDAKGTTC NQRLERVSGT DHTHILRVPF RSESGTLRKW ISRFDVWPYL ETYAEDVASE
401: IAAELQGYPD FIIGNYSDGN LVASLLAYKM GVTQCTIAHA LEKTKYPDSD LYWKKFEDKY HFSCQFTADL IAMNNADFII TSTYQEIAGT KNTVGQYESH
501: TGFTLPGLYR VVHGIDVFDP KFNIVSPGAD MSIYFPYSEK QNRLTALHGS IEKLLFDPEQ TDEYIGSLKD KSKPIIFSMA RLDRVKNITG LVECFGKNSK
601: LRELVNLVVV AGYIDVKKSS DREEIAEIEK MHELMKKYNL NGDFRWIAAQ TNRARNGELY RYIADTQGAF IQPAFYEAFG LTVVEAMTCG LPTFATCHGG
701: PAEIIEHGIS GFHIDPYHPD QASELLVEFF QKSKEDPDHW KKISNGGLQR IYERYTWKIY SERLMTLAGV YSFWKYVSKL ERRETRRYLE MFYILKFRDL
801: ANSVPLAKDD AS

Best Arabidopsis Sequence Match ( AT4G02280.1 )
(BLAST)

001: MANPKLTRVL STRDRVQDTL SAHRNELVAL LSRYVDQGKG ILQPHNLIDE LESVIGDDET KKSLSDGPFG EILKSAMEAI VVPPFVALAV RPRPGVWEYV
101: RVNVFELSVE QLTVSEYLRF KEELVDGPNS DPFCLELDFE PFNANVPRPS RSSSIGNGVQ FLNRHLSSVM FRNKDCLEPL LDFLRVHKYK GHPLMLNDRI
201: QSISRLQIQL SKAEDHISKL SQETPFSEFE YALQGMGFEK GWGDTAGRVL EMMHLLSDIL QAPDPSSLEK FLGMVPMVFN VVILSPHGYF GQANVLGLPD
301: TGGQVVYILD QVRALETEML LRIKRQGLDI SPSILIVTRL IPDAKGTTCN QRLERVSGTE HTHILRVPFR SEKGILRKWI SRFDVWPYLE NYAQDAASEI
401: VGELQGVPDF IIGNYSDGNL VASLMAHRMG VTQCTIAHAL EKTKYPDSDI YWKDFDNKYH FSCQFTADLI AMNNADFIIT STYQEIAGTK NTVGQYESHG
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM TIYFPYSEET RRLTALHGSI EEMLYSPDQT DEHVGTLSDR SKPILFSMAR LDKVKNISGL VEMYSKNTKL
601: RELVNLVVIA GNIDVNKSKD REEIVEIEKM HNLMKNYKLD GQFRWITAQT NRARNGELYR YIADTRGAFA QPAFYEAFGL TVVEAMTCGL PTFATCHGGP
701: AEIIEHGLSG FHIDPYHPEQ AGNIMADFFE RCKEDPNHWK KVSDAGLQRI YERYTWKIYS ERLMTLAGVY GFWKYVSKLE RRETRRYLEM FYILKFRDLV
801: KTVPSTADD

Arabidopsis Description

SUS3Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6L8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.