Factsheet for PGSC0003DMT400017087

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400017087

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02280.1	PGSC0003DMT400017087	AT4G02280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g098590.2.1	Tomato	cytosol	97.78	97.66
VIT_07s0005g00750.t01	Wine grape	cytosol	82.24	82.24
KRH68215	Soybean	cytosol, endoplasmic reticulum, nucleus	80.27	80.17
KRG96468	Soybean	cytosol, endoplasmic reticulum, nucleus	79.53	79.43
GSMUA_Achr8P22470_001	Banana	cytosol	79.04	79.23
Os03t0340500-01	Rice	cytosol, plasma membrane, plastid	78.55	78.74
AT4G02280.1	Thale cress	mitochondrion	78.18	78.37
EER92301	Sorghum	cytosol	78.18	78.37
Bra036282.1-P	Field mustard	cytosol, mitochondrion	78.05	78.05
CDY22042	Canola	cytosol, mitochondrion	78.05	78.05
CDY52781	Canola	mitochondrion	77.81	77.81
TraesCS4D01G169800.1	Wheat	cytosol	77.56	77.75
HORVU4Hr1G049500.3	Barley	cytosol	77.44	77.53
GSMUA_Achr3P08190_001	Banana	cytosol	59.56	77.4
GSMUA_Achr3P08200_001	Banana	mitochondrion	17.26	77.35
Zm00001d029091_P003	Maize	cytosol	78.42	77.18
TraesCS4A01G140000.1	Wheat	cytosol, golgi, unclear	76.82	77.01
TraesCS4B01G167500.1	Wheat	cytosol	76.45	76.64
Zm00001d029087_P002	Maize	cytosol	78.3	74.79
PGSC0003DMT400007505	Potato	cytosol	68.8	69.32
PGSC0003DMT400035262	Potato	cytosol	68.19	68.44
Zm00001d010801_P001	Maize	cytosol	20.22	66.94
PGSC0003DMT400035264	Potato	cytosol	61.78	62.39
PGSC0003DMT400079728	Potato	cytosol	12.58	57.95
PGSC0003DMT400043117	Potato	cytosol	57.09	55.12
CDX87785	Canola	cytosol	10.23	51.55
CDY46981	Canola	cytosol, nucleus, plastid	14.92	35.28
PGSC0003DMT400049042	Potato	cytosol	3.33	18.88
PGSC0003DMT400071807	Potato	cytosol	19.98	15.37
PGSC0003DMT400067951	Potato	nucleus	19.48	14.85
PGSC0003DMT400049047	Potato	golgi, mitochondrion, plastid	8.14	11.85
PGSC0003DMT400076855	Potato	cytosol, peroxisome, plastid	6.66	10.34

Protein Annotations

KEGG:00500+2.4.1.13	Gene3D:1.20.120.1230	MapMan:3.1.4.2	Gene3D:3.10.450.330	Gene3D:3.40.50.2000	ProteinID:AAO67719
ProteinID:AAO67719.1	EMBL:AY205302	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0005985	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016157	GO:GO:0016740
GO:GO:0016757	InterPro:Glyco_trans_1	UniProt:M1A8J5	PFAM:PF00534	PFAM:PF00862	EnsemblPlantsGene:PGSC0003DMG400006672
PGSC:PGSC0003DMG400006672	EnsemblPlants:PGSC0003DMT400017087	PANTHER:PTHR12526	PANTHER:PTHR12526:SF509	SUPFAM:SSF53756	InterPro:Sucrose_synth
InterPro:Sucrose_synthase_pln/cyn	TIGRFAMs:TIGR02470	UniParc:UPI0002955461	:	:	:

Description

Sucrose synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400006672]

Coordinates

chr9:-:61464882..61472259

Molecular Weight (calculated)

92795.5 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.288

Length

811 amino acids

Sequence
(BLAST)

001: MSNPKFTRVP SMRERVEDTL SAHRNQLVAL LSRYVAQGKG ILQPHHLIDE FNSAVCDDTA CEKLKEGPFC EILKSTQEAI VLPPFVAIAV RPRPGVWEYV
101: RVNVYDLSVE QLTIPEYLRF KEELVDGEDN NLFVLELDFE PFNASVPRPS RSSSIGNGVQ FLNRHLSSNM FRSKESLDPL LDFLRGHNHK GNVLMLNERI
201: QRISRLESSL NKADDYLSKL PPDTPYTEFE YALQEMGFEK GWGDTAKRVL ETMHLLSDIL QAPDPSTLET FLGRLPMVFN VVILSPHGYF GQANVLGLPD
301: TGGQVVYILD QVRALEAEML LRIKQQGLNF KPRILVVTRL IPDAKGTTCN QRLERISGTE YSHILRVPFR TENGILHKWI SRFDVWPYLE KFTEDVAGEM
401: SAELQGVPDL IIGNYSDGNL VASLLAYKMG ITQCTIAHAL EKTKYPDSDI YWKKFEEKYH FSCQFTADLL SMNHSDFIIT STYQEIAGTK NTVGQYESHT
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM TIYFPYSDKE KRLTSLHPSI EKLLFDPEQN EVHIGNLNDQ SKPIIFSMAR LDRVKNITGL VECYAKNATL
601: RKLANLVVVA GYNDVKKSND REEIAEIEKM HALMKEHSLD GQFRWISAQM NRARNGELYR YIADKRGIFV QPAFYEAFGL TVVEAMTCGL PTFATCHGGP
701: MEIIQDGVSG YHIDPYHPNK AAELMVEFFQ RCEQNPTHWE NISASGLQRI LDRYTWKIYS ERLMTLAGVY GFWKLVSKLE RRETRRYLEM FYILKFRELV
801: KSVPLAIDDK H

Best Arabidopsis Sequence Match ( AT4G02280.1 )
(BLAST)

001: MANPKLTRVL STRDRVQDTL SAHRNELVAL LSRYVDQGKG ILQPHNLIDE LESVIGDDET KKSLSDGPFG EILKSAMEAI VVPPFVALAV RPRPGVWEYV
101: RVNVFELSVE QLTVSEYLRF KEELVDGPNS DPFCLELDFE PFNANVPRPS RSSSIGNGVQ FLNRHLSSVM FRNKDCLEPL LDFLRVHKYK GHPLMLNDRI
201: QSISRLQIQL SKAEDHISKL SQETPFSEFE YALQGMGFEK GWGDTAGRVL EMMHLLSDIL QAPDPSSLEK FLGMVPMVFN VVILSPHGYF GQANVLGLPD
301: TGGQVVYILD QVRALETEML LRIKRQGLDI SPSILIVTRL IPDAKGTTCN QRLERVSGTE HTHILRVPFR SEKGILRKWI SRFDVWPYLE NYAQDAASEI
401: VGELQGVPDF IIGNYSDGNL VASLMAHRMG VTQCTIAHAL EKTKYPDSDI YWKDFDNKYH FSCQFTADLI AMNNADFIIT STYQEIAGTK NTVGQYESHG
501: AFTLPGLYRV VHGIDVFDPK FNIVSPGADM TIYFPYSEET RRLTALHGSI EEMLYSPDQT DEHVGTLSDR SKPILFSMAR LDKVKNISGL VEMYSKNTKL
601: RELVNLVVIA GNIDVNKSKD REEIVEIEKM HNLMKNYKLD GQFRWITAQT NRARNGELYR YIADTRGAFA QPAFYEAFGL TVVEAMTCGL PTFATCHGGP
701: AEIIEHGLSG FHIDPYHPEQ AGNIMADFFE RCKEDPNHWK KVSDAGLQRI YERYTWKIYS ERLMTLAGVY GFWKYVSKLE RRETRRYLEM FYILKFRDLV
801: KTVPSTADD

Arabidopsis Description

SUS3Sucrose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6L8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.