Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G013000.1 | Wheat | nucleus | 98.6 | 98.78 |
| TraesCSU01G044500.2 | Wheat | unclear | 98.23 | 97.77 |
| HORVU3Hr1G002280.1 | Barley | plastid | 95.8 | 90.8 |
| Os08t0301500-01 | Rice | plasma membrane | 87.11 | 87.52 |
| Zm00001d050125_P002 | Maize | nucleus | 83.85 | 84.8 |
| OQU78428 | Sorghum | nucleus | 84.69 | 84.77 |
| GSMUA_Achr4P06050_001 | Banana | cytosol | 72.27 | 73.09 |
| GSMUA_Achr9P22510_001 | Banana | cytosol | 72.36 | 73.04 |
| VIT_11s0118g00200.t01 | Wine grape | cytosol | 68.07 | 69.3 |
| CDX92473 | Canola | cytosol | 62.28 | 69.05 |
| CDY35815 | Canola | cytosol | 62.18 | 68.94 |
| PGSC0003DMT400071807 | Potato | cytosol | 67.51 | 68.6 |
| Solyc07g007790.2.1 | Tomato | cytosol | 67.32 | 68.41 |
| KRH03629 | Soybean | endoplasmic reticulum | 66.57 | 67.33 |
| VIT_04s0008g05730.t01 | Wine grape | cytosol | 66.48 | 67.3 |
| CDY45096 | Canola | cytosol | 61.06 | 67.28 |
| KRH20178 | Soybean | nucleus | 66.48 | 67.23 |
| CDX88168 | Canola | nucleus | 60.04 | 66.98 |
| Bra002289.1-P | Field mustard | cytosol | 65.08 | 66.89 |
| AT5G20280.1 | Thale cress | cytosol | 65.08 | 66.83 |
| CDX80498 | Canola | cytosol | 60.32 | 66.8 |
| CDX70382 | Canola | cytosol | 59.85 | 66.63 |
| Bra020096.1-P | Field mustard | cytosol | 62.65 | 65.15 |
| Bra009830.1-P | Field mustard | nucleus | 63.68 | 65.14 |
| AT5G11110.1 | Thale cress | cytosol | 63.4 | 64.85 |
| CDX78411 | Canola | cytosol | 62.84 | 64.77 |
| Bra006090.1-P | Field mustard | cytosol | 62.75 | 64.68 |
| TraesCS6A01G144800.1 | Wheat | cytoskeleton, cytosol, nucleus | 57.61 | 64.0 |
| TraesCS7A01G518200.1 | Wheat | cytosol | 57.8 | 63.68 |
| Solyc08g042000.2.1 | Tomato | nucleus | 62.0 | 63.54 |
| PGSC0003DMT400076855 | Potato | cytosol, peroxisome, plastid | 25.68 | 52.68 |
| TraesCS3A01G425500.1 | Wheat | nucleus | 52.29 | 52.14 |
| TraesCS4A01G225100.1 | Wheat | cytosol | 47.71 | 48.3 |
| TraesCS4A01G492600.1 | Wheat | cytosol | 12.42 | 23.75 |
| TraesCS7A01G158900.1 | Wheat | golgi, nucleus | 15.59 | 20.67 |
| TraesCS4A01G140000.1 | Wheat | cytosol, golgi, unclear | 15.59 | 20.64 |
| TraesCS4A01G446700.1 | Wheat | cytosol | 15.41 | 20.25 |
| TraesCS7A01G040900.2 | Wheat | cytosol | 15.41 | 20.25 |
| TraesCS2A01G168200.1 | Wheat | golgi, unclear | 15.31 | 19.74 |
| TraesCS2A01G406700.1 | Wheat | cytosol | 15.13 | 18.75 |
| TraesCS7A01G557600.1 | Wheat | cytosol | 14.94 | 18.58 |
Protein Annotations
| KEGG:00500+2.4.1.14 | MapMan:3.1.2.7 | Gene3D:3.40.50.1000 | Gene3D:3.40.50.2000 | Gene3D:3.90.1070.10 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005975 | GO:GO:0005985 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016157 | GO:GO:0016740 | GO:GO:0046524 | InterPro:Glyco_trans_1 | InterPro:HAD_sf |
| InterPro:IPR023214 | PFAM:PF00534 | PFAM:PF00862 | PFAM:PF05116 | PANTHER:PTHR12526 | PANTHER:PTHR12526:SF334 |
| InterPro:SPP_N | InterPro:SPS_C | SUPFAM:SSF53756 | InterPro:Sucrose_synth | InterPro:SucrsPsyn_pln | TIGRFAMs:TIGR02468 |
| EnsemblPlantsGene:TraesCS3A01G015500 | EnsemblPlants:TraesCS3A01G015500.1 | TIGR:cd03800 | TIGR:cd16419 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:-:10300920..10308959
Molecular Weight (calculated)
119103.0 Da
IEP (calculated)
6.292
GRAVY (calculated)
-0.462
Length
1071 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVGNDWINSY LEAILDAGGA AGEISAASTA PGGGGDAAEK RRDKSSLMLR ERGRFNPARY FVEEVISGFD ETDLYKTWVR TSAMRSPQER NTRLENMSWR
0101: IWNLARKKKQ IEGEEASRSS KKRLEREKAR RDAAADLSED LSDGEKGEHI NESSIHAEST RGHMPRIGST DAIDVWANQH KDKKLYIVLV SIHGLIRGEN
0201: MELGRDSDTG GQVKYVVELA RALGETPGVY RVDLLTRQIS APDVDWSYGE PTEMLSPRNS ENLGDDMGES SGAYIVRIPF GPREKYIPKE QLWPHIQEFV
0301: DGALVHIMQM SKVLGEQVGN GQPVWPVVIH GHYADAGDSA ALLSGALNVP MVFTGHSLGR DKLEQLLKQG RQTRDEVNAT YKIMRRIEAE ELCLDASEIV
0401: ITSTRQEIDK QWGLYNGFDV IMERKLRARI KRGVSCYGRE MPRMVPIPPG MEFSHIVPHD VDLDSEEANE VGSDSPDPPV WADIMRFFSN PRKPMILALA
0501: RPDPKKNITT LVKAFGEHHE LRNLANLTLI MGNRDVIDEM SSTNGAVLTS VLKLIDKYDL YGQVAYPKHH KQSEVPDIYR LAARTKGVFI NCAYIEPFGL
0601: TLIEAAAYGL PMVATQNGGP VDIHRVLDNG ILVDPHNQND IAEALYRLVS DKQLWAKCRQ NGLDNIHRFS WPEHCKNYLS RVGTLKSRHP RWQKSDDATE
0701: VSETDSRGDS LRDIHDISLN LKISLDSEKS GSMSKYGRSS TSDRRNLEDA VQKFSEAVSA GTKDESGEKA GATTGSNKWP SLRRRKHIVV IAVDSVQDAD
0801: LVQIIKNIFQ ASNKEKSSGA LGFVLSTSRA ASEIHPLLTS GGIEITDFDA FICSSGSDLC YPSSNSEDML SPAELPFMID LDYHSQIQYR WGGEGLRKTL
0901: IRWAAEKNSE SGKEAVVEDD ECSSTYCISF KVKNTEAVPP VKDLRKTMRI QALRCHVLYS HDGSKLNFIP VLASRSQALR YLYIRWGVEL SNMTVVVGES
1001: GDTDYEGLLG GVQKTIILKG SFNSAPNQLH AARNYSLEDV VSFDKPGIAS VDGYAPDILK SALQQFGALQ G
0101: IWNLARKKKQ IEGEEASRSS KKRLEREKAR RDAAADLSED LSDGEKGEHI NESSIHAEST RGHMPRIGST DAIDVWANQH KDKKLYIVLV SIHGLIRGEN
0201: MELGRDSDTG GQVKYVVELA RALGETPGVY RVDLLTRQIS APDVDWSYGE PTEMLSPRNS ENLGDDMGES SGAYIVRIPF GPREKYIPKE QLWPHIQEFV
0301: DGALVHIMQM SKVLGEQVGN GQPVWPVVIH GHYADAGDSA ALLSGALNVP MVFTGHSLGR DKLEQLLKQG RQTRDEVNAT YKIMRRIEAE ELCLDASEIV
0401: ITSTRQEIDK QWGLYNGFDV IMERKLRARI KRGVSCYGRE MPRMVPIPPG MEFSHIVPHD VDLDSEEANE VGSDSPDPPV WADIMRFFSN PRKPMILALA
0501: RPDPKKNITT LVKAFGEHHE LRNLANLTLI MGNRDVIDEM SSTNGAVLTS VLKLIDKYDL YGQVAYPKHH KQSEVPDIYR LAARTKGVFI NCAYIEPFGL
0601: TLIEAAAYGL PMVATQNGGP VDIHRVLDNG ILVDPHNQND IAEALYRLVS DKQLWAKCRQ NGLDNIHRFS WPEHCKNYLS RVGTLKSRHP RWQKSDDATE
0701: VSETDSRGDS LRDIHDISLN LKISLDSEKS GSMSKYGRSS TSDRRNLEDA VQKFSEAVSA GTKDESGEKA GATTGSNKWP SLRRRKHIVV IAVDSVQDAD
0801: LVQIIKNIFQ ASNKEKSSGA LGFVLSTSRA ASEIHPLLTS GGIEITDFDA FICSSGSDLC YPSSNSEDML SPAELPFMID LDYHSQIQYR WGGEGLRKTL
0901: IRWAAEKNSE SGKEAVVEDD ECSSTYCISF KVKNTEAVPP VKDLRKTMRI QALRCHVLYS HDGSKLNFIP VLASRSQALR YLYIRWGVEL SNMTVVVGES
1001: GDTDYEGLLG GVQKTIILKG SFNSAPNQLH AARNYSLEDV VSFDKPGIAS VDGYAPDILK SALQQFGALQ G
0001: MAGNDWVNSY LEAILDVGQG LDDARSSPSL LLRERGRFTP SRYFVEEVIT GYDETDLHRS WVKAVATRSP QERNTRLENM CWRIWNLARQ KKQHEEKEAQ
0101: RLAKRRLERE KGRREATADM SEEFSEGEKG DIISDISTHG ESTKPRLPRI NSAESMELWA SQQKGNKLYL VLISLHGLIR GENMELGRDS DTGGQVKYVV
0201: ELARALGSMP GVYRVDLLTR QVSSPDVDYS YGEPTEMLTP RDSEDFSDEM GESSGAYIVR IPFGPKDKYI PKELLWPHIP EFVDGAMSHI MQMSNVLGEQ
0301: VGVGKPIWPS AIHGHYADAG DATALLSGAL NVPMLLTGHS LGRDKLEQLL RQGRLSKEEI NSTYKIMRRI EGEELSLDVS EMVITSTRQE IDEQWRLYDG
0401: FDPILERKLR ARIKRNVSCY GRFMPRMVKI PPGMEFNHIV PHGGDMEDTD GNEEHPTSPD PPIWAEIMRF FSNSRKPMIL ALARPDPKKN ITTLVKAFGE
0501: CRPLRELANL ALIMGNRDGI DEMSSTSSSV LLSVLKLIDK YDLYGQVAYP KHHKQSDVPD IYRLAAKSKG VFINPAIIEP FGLTLIEAAA HGLPMVATKN
0601: GGPVDIHRVL DNGLLVDPHD QQSISEALLK LVADKHLWAK CRQNGLKNIH QFSWPEHCKT YLSRITSFKP RHPQWQSDDG GDNSEPESPS DSLRDIQDIS
0701: LNLKFSFDGS GNDNYMNQEG SSMDRKSKIE AAVQNWSKGK DSRKMGSLER SEVNSGKFPA VRRRKFIVVI ALDFDGEEDT LEATKRILDA VEKERAEGSV
0801: GFILSTSLTI SEVQSFLVSG GLNPNDFDAF ICNSGSDLHY TSLNNEDGPF VVDFYYHSHI EYRWGGEGLR KTLIRWASSL NEKKADNDEQ IVTLAEHLST
0901: DYCYTFTVKK PAAVPPVREL RKLLRIQALR CHVVYSQNGT RINVIPVLAS RIQALRYLFV RWGIDMAKMA VFVGESGDTD YEGLLGGLHK SVVLKGVSCS
1001: ACLHANRSYP LTDVISFESN NVVHASPDSD VRDALKKLEL LKD
0101: RLAKRRLERE KGRREATADM SEEFSEGEKG DIISDISTHG ESTKPRLPRI NSAESMELWA SQQKGNKLYL VLISLHGLIR GENMELGRDS DTGGQVKYVV
0201: ELARALGSMP GVYRVDLLTR QVSSPDVDYS YGEPTEMLTP RDSEDFSDEM GESSGAYIVR IPFGPKDKYI PKELLWPHIP EFVDGAMSHI MQMSNVLGEQ
0301: VGVGKPIWPS AIHGHYADAG DATALLSGAL NVPMLLTGHS LGRDKLEQLL RQGRLSKEEI NSTYKIMRRI EGEELSLDVS EMVITSTRQE IDEQWRLYDG
0401: FDPILERKLR ARIKRNVSCY GRFMPRMVKI PPGMEFNHIV PHGGDMEDTD GNEEHPTSPD PPIWAEIMRF FSNSRKPMIL ALARPDPKKN ITTLVKAFGE
0501: CRPLRELANL ALIMGNRDGI DEMSSTSSSV LLSVLKLIDK YDLYGQVAYP KHHKQSDVPD IYRLAAKSKG VFINPAIIEP FGLTLIEAAA HGLPMVATKN
0601: GGPVDIHRVL DNGLLVDPHD QQSISEALLK LVADKHLWAK CRQNGLKNIH QFSWPEHCKT YLSRITSFKP RHPQWQSDDG GDNSEPESPS DSLRDIQDIS
0701: LNLKFSFDGS GNDNYMNQEG SSMDRKSKIE AAVQNWSKGK DSRKMGSLER SEVNSGKFPA VRRRKFIVVI ALDFDGEEDT LEATKRILDA VEKERAEGSV
0801: GFILSTSLTI SEVQSFLVSG GLNPNDFDAF ICNSGSDLHY TSLNNEDGPF VVDFYYHSHI EYRWGGEGLR KTLIRWASSL NEKKADNDEQ IVTLAEHLST
0901: DYCYTFTVKK PAAVPPVREL RKLLRIQALR CHVVYSQNGT RINVIPVLAS RIQALRYLFV RWGIDMAKMA VFVGESGDTD YEGLLGGLHK SVVLKGVSCS
1001: ACLHANRSYP LTDVISFESN NVVHASPDSD VRDALKKLEL LKD
Arabidopsis Description
SPS1Sucrose-phosphate synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BT0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.